Browse Element(s) Details


Os.51005.1.S1_at

Description gb:AK060118.1
DB_XREF= gi:32970136
TID=Os.51005.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51005 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033097O19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-308-E10, full insert sequence.
FL= gb:AK102576.1 gb:AK060118.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0553011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05480Os.49126.1.S1_at10/1111+2458323..2464637Transcription factor HBP-1b, putative, expressed
LOC_Os11g05490Os.16214.1.S1_at11/1111+2472570..2473367expressed protein
LOC_Os11g05500OsAffx.30828.1.S1_at11/1111+2479882..2480121hypothetical protein
LOC_Os11g05510NANA11+2484109..2484526tuber storage protein, putative
LOC_Os11g05520Os.54903.1.S1_at2/1111+2485289..2485837Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os11g05530Os.51005.1.S1_at11/1111+2486586..2487649expressed protein
LOC_Os11g05540Os.21289.1.S1_at11/1111+2496341..2501137rac GTPase activating protein 1, putative, expressed
LOC_Os11g05550Os.55491.1.S1_at11/1111+2502845..2504306expressed protein
LOC_Os11g05550Os.51098.1.S1_x_at1/1111+2502845..2504306expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51005.1.S1_at--1007--9291Chr11:2487038..2487062 (25 bp)
TCCGCCGGAGTCACTCGCGGAAGAA
LOC_Os11g05530
Os.51005.1.S1_at--997--7091Chr11:2487029..2487053 (25 bp)
GTCACTCGCGGAAGAAGAACGCCGT
LOC_Os11g05530
Os.51005.1.S1_at--574--9471Chr11:2486808..2486832 (25 bp)
TCTGGGCCGTTGTAGTAGAGGACTA
LOC_Os11g05530
Os.51005.1.S1_at--204--3651Chr11:2486786..2486810 (25 bp)
CTATTTGGGTTTGGTACGAGTCTCT
LOC_Os11g05530
Os.51005.1.S1_at--280--9951Chr11:2486772..2486796 (25 bp)
TACGAGTCTCTGTTGCTGTTAGTTG
LOC_Os11g05530
Os.51005.1.S1_at--52--9131Chr11:2486759..2486783 (25 bp)
TGCTGTTAGTTGGTGCCAGTGCTTT
LOC_Os11g05530
Os.51005.1.S1_at--323--8611Chr11:2486749..2486773 (25 bp)
TGGTGCCAGTGCTTTCGGTGTAGTT
LOC_Os11g05530
Os.51005.1.S1_at--754--6651Chr11:2486727..2486751 (25 bp)
GTTGAGATGTGTACATACTGCAGTT
LOC_Os11g05530
Os.51005.1.S1_at--277--3571Chr11:2486714..2486738 (25 bp)
CATACTGCAGTTAGGACACATTTTT
LOC_Os11g05530
Os.51005.1.S1_at--621--8311Chr11:2486686..2486710 (25 bp)
GGCTCCTTCTCCATTTAATTTTTGT
LOC_Os11g05530
Os.51005.1.S1_at--853--10351Chr11:2486655..2486679 (25 bp)
TTTTTGGCTTGTTTTTGTCTGTTGA
LOC_Os11g05530
Target Sequence 
TCCGCCGGAGTCACTCGCGGAAGAAGAACGCCGTGGAGTGCGTCGACCAGTCCCCGCCTCCGCTGCCTCCATGGGCGTCG
AGGCGGGGAGAGCCGAAGGAGGTCAAGGAGGCGACGCCGGCGGCGGCGGCGGCGATGGCGCCGGGGTTGGGAGGGATGAT
GCGGTTCGCGTCGGGGAGGCGGGCGGCGGATTGGGCGACCGAGATGGAGCCGGATGGACGCGTGGCGAGATCTGGGCCGT
TGTAGTAGAGGACTATTTGGGTTTGGTACGAGTCTCTGTTGCTGTTAGTTGGTGCCAGTGCTTTCGGTGTAGTTGAGATG
TGTACATACTGCAGTTAGGACACATTTTTTTGGGCTCCTTCTCCATTTAATTTTTGTTTAATTTTTTTGGCTTGTTTTTG
TCTGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51005.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis