Browse Element(s) Details


Os.51106.1.S1_at

Description gb:AK060686.1
DB_XREF= gi:32970704
TID=Os.51106.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51106 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-029-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-G12, full insert sequence.
FL= gb:AK060686.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1454011/11Endoglucanase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g14510Os.4697.1.S1_at11/116+8151445..8158386Glucose-6-phosphate isomerase, cytosolic B, putative, expressed
LOC_Os06g14510Os.57457.1.S1_x_at2/116+8151445..8158386Glucose-6-phosphate isomerase, cytosolic B, putative, expressed
LOC_Os06g14520NANA6+8162528..8162758hypothetical protein
LOC_Os06g14530Os.12298.1.S1_at11/116+8175720..8176754expressed protein
LOC_Os06g14530OsAffx.27637.1.S1_at1/116+8175720..8176754expressed protein
LOC_Os06g14540Os.51106.1.S1_at11/116+8177992..8183623Endoglucanase 1 precursor, putative, expressed
LOC_Os06g14550Os.12088.1.S1_at11/116+8193484..8197031Signal recognition particle 9 kDa protein, putative, expressed
LOC_Os06g14560OsAffx.15425.1.S1_at11/116+8198009..8199201hypothetical protein
LOC_Os06g14570Os.27691.1.S1_x_at2/116+8202785..8206594retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0007389biological_processpattern specification
GO:0042547biological_processcell wall modification during multidimensional cell growth
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008810molecular_functioncellulase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51106.1.S1_at--351--10631Chr06:8178400..8178424 (25 bp)
TTCCCCGTTTTGCATTGGCCGTAGT
LOC_Os06g14540
Os.51106.1.S1_at--701--6871Chr06:8178340..8178364 (25 bp)
GTATTGATCCTGTAGCGTGTGCCGA
LOC_Os06g14540
Os.51106.1.S1_at--905--8651Chr06:8178323..8178347 (25 bp)
TGTGCCGATCCTTTCCTGTAAAAAA
LOC_Os06g14540
Os.51106.1.S1_at--1147--1611Chr06:8178275..8178299 (25 bp)
AGCGTGGTTGTATGCACTGTACCCT
LOC_Os06g14540
Os.51106.1.S1_at--213--4651Chr06:8178230..8178254 (25 bp)
GCGTATGCTGGATGCGATGTCTTAT
LOC_Os06g14540
Os.51106.1.S1_at--777--9651Chr06:8178200..8178224 (25 bp)
TCAGATGTCCATCCGGCTATGCGAT
LOC_Os06g14540
Os.51106.1.S1_at--373--611Chr06:8178182..8178206 (25 bp)
ATGCGATGCATTCTGTTCGGCTATC
LOC_Os06g14540
Os.51106.1.S1_at--66--8311Chr06:8178164..8178188 (25 bp)
GGCTATCTACTCTAAGCATCCTTTG
LOC_Os06g14540
Os.51106.1.S1_at--440--2711Chr06:8178091..8178115 (25 bp)
AAGCATATCTGTAACGTCGTCGTCC
LOC_Os06g14540
Os.51106.1.S1_at--116--771Chr06:8178059..8178083 (25 bp)
ATGTCATGTGCAGCATTGGGCCTTT
LOC_Os06g14540
Os.51106.1.S1_at--744--6551Chr06:8178021..8178045 (25 bp)
GATTACTCCTCGCTGGAATCCAAAG
LOC_Os06g14540
Target Sequence 
TTCCCCGTTTTGCATTGGCCGTAGTGGGCCGATTTGATCGAGTAATTGGTTAGTAATTTAGTATTGATCCTGTAGCGTGT
GCCGATCCTTTCCTGTAAAAAATGGCAGGAACGGGGATTGGTCGTAGCGTGGTTGTATGCACTGTACCCTAGCATTTTAG
TAGCAATTTAGCGTATGCTGGATGCGATGTCTTATTGGCATCAGATGTCCATCCGGCTATGCGATGCATTCTGTTCGGCT
ATCTACTCTAAGCATCCTTTGTCAAGTGTCAAGGGGGCCGGAATTAGTGCCAGGATTAAGCTTTAAGCTAAGCATATCTG
TAACGTCGTCGTCCACAAGACATGTCATGTGCAGCATTGGGCCTTTTTCCGGCTTTTGGGATTACTCCTCGCTGGAATCC
AAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51106.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis