Browse Element(s) Details


Os.51134.2.S1_x_at

Description gb:AK105137.1
DB_XREF= gi:32990346
TID=Os.51134.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51134 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-102-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-B03, full insert sequence.
FL= gb:AK105137.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g102202/11glycosyltransferase family protein, putative
LOC_Os07g101902/11UDP-rhamnose:rhamnosyltransferase, putative, expressed
LOC_Os07g101601/11UDP-rhamnose:rhamnosyltransferase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10170OsAffx.5278.1.S1_at10/117+5471891..5473233hypothetical protein
LOC_Os07g10180OsAffx.16189.1.S1_at11/117+5476478..5477071hypothetical protein
LOC_Os07g10190Os.51134.1.S1_at11/117+5478786..5480876UDP-rhamnose:rhamnosyltransferase, putative, expressed
LOC_Os07g10190Os.51134.2.S1_x_at2/117+5478786..5480876UDP-rhamnose:rhamnosyltransferase, putative, expressed
LOC_Os07g10200OsAffx.28377.1.S1_at11/117+5483651..5484775hypothetical protein
LOC_Os07g10210OsAffx.16190.1.S1_at11/117+5488074..5488562hypothetical protein
LOC_Os07g10210OsAffx.16190.1.S1_x_at11/117+5488074..5488562hypothetical protein
LOC_Os07g10220Os.51134.2.S1_x_at2/117+5489010..5489558glycosyltransferase family protein, putative
LOC_Os07g10230OsAffx.28379.1.S1_at11/117+5490306..5491157hydroquinone glucosyltransferase, putative, expressed
LOC_Os07g10240NANA7+5495790..5497289UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os07g10250Os.25626.1.S1_at11/117+5498540..5504789ATP-dependent RNA helicase An3, putative, expressed
LOC_Os07g10254Os.51539.1.S1_at11/117+5505323..5506008expressed protein
LOC_Os07g10260NANA7+5509781..5510035hypothetical protein
LOC_Os07g10270OsAffx.6537.1.S1_at1/117+5511800..5513220hypothetical protein
LOC_Os07g10280NANA7+5513866..5514120hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51134.2.S1_x_at--108--1033Chr07:5489332..5489356 (25 bp)
AGGTCGGGCTCCTCAAGAAGGCGTT
LOC_Os07g10220
Os.51134.2.S1_x_at--837--7891NONE
GGTTCTCGAGGAAGCCAGACTGGAT
NONE
Os.51134.2.S1_x_at--14--7971Chr07:5489464..5489488 (25 bp)
GGATCATACTCGACTTCGCGCAGAA
LOC_Os07g10220
Os.51134.2.S1_x_at--356--4151NONE
CGCGCAGAACTGGATATGGCCGACA
NONE
Os.51134.2.S1_x_at--1031--8891NONE
TGAGATTGCATGTGCCATCTTCTCC
NONE
Os.51134.2.S1_x_at--171--2411NONE
AAACAAGAGAACCTAGCTCACCCGC
NONE
Os.51134.2.S1_x_at--235--6951NONE
GTACCACCACGGAAGACTACATGGC
NONE
Os.51134.2.S1_x_at--568--4051NONE
CGATGCTGATCGTTTCTGGGACTCA
NONE
Os.51134.2.S1_x_at--426--9951NONE
TACCGTAGTTGTCCCGAGGCAGAGC
NONE
Os.51134.2.S1_x_at--937--9631NONE
TCACCAAGCTCTATACTAAGCCGGC
NONE
Os.51134.2.S1_x_at--296--3811Chr07:5480091..5480115 (25 bp)
CTCCCGCTCTTGACGACAATGATAT
LOC_Os07g10190
Target Sequence 
AGGTCGGGCTCCTCAAGAAGGCGTTCGACGGCCTCGCCGTGCCCTTCGCTAGCCTCATCGCCGAGGCCTGTGGCGGCGCC
GCCGGTGATGGGGAAGAAGCCGCCGCTGGGTTCTCGAGGAAGCCAGACTGGATCATACTCGACTTCGCGCAGAACTGGAT
ATGGCCGACAGCCGAGGAGTATGAGATTGCATGTGCCATCTTCTCCATCTTCCCGGCGGCATTGGGGGCCTTCGTTGGCA
CGAAACAAGAGAACCTAGCTCACCCGCGTACCACCACGGAAGACTACATGGCCCANCCAGCGTGGATCCCCTTCCCCTCC
ACCGTTACATACCGGCGGCACGAAGCGGAGTGGATAGCAGCCGGTTTCCGGCCCAACGCCTCCGGTGTGTCCGATGCTGA
TCGTTTCTGGGACTCAGAGCGCCCCTCCTGCCGCCTCATCATCTACCGTAGTTGTCCCGAGGCAGAGCCGCGACTGTTCC
CGCTCCTCACCAAGCTCTATACTAAGCCGGCCATCCCCTCCGGCCTCCTTGTGCCTCCCGCTCTTGACGACAATGATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51134.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis