Browse Element(s) Details


Os.51183.1.S1_at

Description gb:AK061363.1
DB_XREF= gi:32971381
TID=Os.51183.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51183 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-304-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-304-C06, full insert sequence.
FL= gb:AK061363.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1341011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g13400OsAffx.29831.1.S1_at10/119+7740162..7743069expressed protein
LOC_Os09g13400OsAffx.29831.1.S1_s_at3/119+7740162..7743069expressed protein
LOC_Os09g13410Os.51183.1.S1_at11/119+7752372..7754377expressed protein
LOC_Os09g13420OsAffx.6261.1.S1_x_at11/119+7758918..7761038hypothetical protein
LOC_Os09g13430NANA9+7769806..7772168retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g13440OsAffx.29832.2.S1_s_at11/119+7772027..7776015expressed protein
LOC_Os09g13440OsAffx.29832.2.S1_at11/119+7772027..7776015expressed protein
LOC_Os09g13440Os.6976.2.A1_at11/119+7772027..7776015expressed protein
LOC_Os09g13440Os.6976.1.S1_s_at11/119+7772027..7776015expressed protein
LOC_Os09g13450OsAffx.17685.1.S1_at11/119+7778360..7778914hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51183.1.S1_at--934--9911Chr09:7753954..7753978 (25 bp)
TACTGCCTCTTCGTGTCGCAGCTAG
LOC_Os09g13410
Os.51183.1.S1_at--601--951Chr09:7754011..7754035 (25 bp)
AGGAAAGGCGTGGTCGTGCACTTCA
LOC_Os09g13410
Os.51183.1.S1_at--1058--8591Chr09:7754021..7754045 (25 bp)
TGGTCGTGCACTTCATGGCCACCGA
LOC_Os09g13410
Os.51183.1.S1_at--297--6631Chr09:7754263..7754287 (25 bp)
GTTGTGCAGGCCGTATATGCGGTCA
LOC_Os09g13410
Os.51183.1.S1_at--798--10111Chr09:7754278..7754302 (25 bp)
TATGCGGTCAAGACCTACAGGCCTA
LOC_Os09g13410
Os.51183.1.S1_at--658--5831Chr09:7754289..7754313 (25 bp)
GACCTACAGGCCTACAATCTAGCTA
LOC_Os09g13410
Os.51183.1.S1_at--241--3731Chr09:7754300..7754324 (25 bp)
CTACAATCTAGCTAGGCCACTGTGC
LOC_Os09g13410
Os.51183.1.S1_at--534--451Chr09:7754305..7754329 (25 bp)
ATCTAGCTAGGCCACTGTGCCATAT
LOC_Os09g13410
Os.51183.1.S1_at--62--1971Chr09:7754318..7754342 (25 bp)
ACTGTGCCATATGCCTACCAACTTT
LOC_Os09g13410
Os.51183.1.S1_at--482--9971Chr09:7754333..7754357 (25 bp)
TACCAACTTTGCGTAGCCTATCAAG
LOC_Os09g13410
Os.51183.1.S1_at--245--4651Chr09:7754343..7754367 (25 bp)
GCGTAGCCTATCAAGTAACAAGTAT
LOC_Os09g13410
Target Sequence 
TACTGCCTCTTCGTGTCGCAGCTAGCCGGCACGGCGAGCGACGTCGCGCTCCTGGCGAGGAAAGGCGTGGTCGTGCACTT
CATGGCCACCGACGAGGACGTCGCCGACGGGTTCGCCGGCCTGTGCAGGGGCGTGGCGCTCGACGTCGACGACGCGCGCC
GGAACTACCTGCAGCCGACGTGGGAGAGGATGGAGCGGTGGTACAGCAGCCGGCCGGTCAACTGGATGGCGCTGCTGCGG
CGGCGGCATTTGAGCAACCCGCTGGTGGCGATCGCGCTGCTCGCCGCCATTACTGGCCTAGTCTGTGAAGTTGTGCAGGC
CGTATATGCGGTCAAGACCTACAGGCCTACAATCTAGCTAGGCCACTGTGCCATATGCCTACCAACTTTGCGTAGCCTAT
CAAGTAACAAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51183.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis