Browse Element(s) Details


Os.51218.1.S1_at

Description gb:AK099796.1
DB_XREF= gi:32985005
TID=Os.51218.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.51218 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023108I24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013097H06, full insert sequence.
FL= gb:AK099796.1 gb:AK062108.1 gb:AK100624.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3265011/11leucyl-tRNA synthetase family protein, expressed
LOC_Os03g131701/11ubiquitin fusion protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32580OsAffx.17986.1.S1_at11/119+19445053..19447503expressed protein
LOC_Os09g32590OsAffx.6472.1.S1_at11/119+19448704..19449267hypothetical protein
LOC_Os09g32600OsAffx.6473.1.S1_at11/119+19454454..19457078F-box domain containing protein
LOC_Os09g32610Os.8515.1.A1_at1/119+19458688..19462253expressed protein
LOC_Os09g32620NANA9+19464287..19465759Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os09g32630OsAffx.30123.1.S1_at11/119+19466227..19466736hypothetical protein
LOC_Os09g32640Os.55534.1.A1_at11/119+19468469..19471212Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os09g32650Os.51218.1.S1_at11/119+19472098..19476734leucyl-tRNA synthetase family protein, expressed
LOC_Os09g32660Os.52571.1.A1_at11/119+19478243..19481680expressed protein
LOC_Os09g32670Os.18486.1.S1_at11/119+19485779..19487685NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g32680Os.187.1.S1_s_at11/119+19498552..19502722G1/S-specific cyclin C-type, putative, expressed
LOC_Os09g32680Os.187.1.S1_at11/119+19498552..19502722G1/S-specific cyclin C-type, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0006464biological_processprotein modification
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0016567biological_processprotein ubiquitination
GO:0005622cellular_componentintracellular
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51218.1.S1_at--1157--3591Chr09:19476151..19476175 (25 bp)
CATTGAAGAACTGCTCCATCGGACA
LOC_Os09g32650
Os.51218.1.S1_at--595--8651Chr09:19476251..19476275 (25 bp)
TGGGCCCCACGCTTTGAATTTGAAG
LOC_Os09g32650
Os.51218.1.S1_at--915--5212Chr09:19476266..19476290 (25 bp)
GAATTTGAAGCTTCCTTTTGGTGAA
LOC_Os09g32650
Os.51218.1.S1_at--656--1331Chr09:19476350..19476374 (25 bp)
AGAGGTCCTGTCTGCTTCTGATGAG
LOC_Os09g32650
Os.51218.1.S1_at--43--9111Chr09:19476377..19476401 (25 bp)
TGCTCGTGCTAAAGCTGGCGTGCAT
LOC_Os09g32650
Os.51218.1.S1_at--405--631Chr09:19476400..19476424 (25 bp)
ATGCTTCTATGCTGGACAAGACCCC
LOC_Os09g32650
Os.51218.1.S1_at--172--7771Chr09:19476435..19476459 (25 bp)
GGTGAGCCAGTAGCAATCTTCATGA
LOC_Os09g32650
Os.51218.1.S1_at--753--2391Chr09:19476462..19476486 (25 bp)
AAACTAGACCTCGAAGCGCGGTGCT
LOC_Os09g32650
Os.51218.1.S1_at--643--3971Chr09:19476480..19476504 (25 bp)
CGGTGCTGAGCTTAACTGTCACAAT
LOC_Os09g32650
Os.51218.1.S1_at--319--6071Chr09:19476531..19476555 (25 bp)
GAGTTCACTGAGATTTCCTTATTTT
LOC_Os09g32650
Os.51218.1.S1_at--412--1551Chr09:19476579..19476603 (25 bp)
AGCTTGCAGCTTCTACAGTATCATA
LOC_Os09g32650
Target Sequence 
CATTGAAGAACTGCTCCATCGGACAGGAAACTAACTTCAAACNAGTCCAGAAGCTCTGCATGCCTTTCATCAAGTCGAAA
AAAGATGAGGCGAGGAGTGTTGGGCCCCACGCTTTGAATTTGAAGCTTCCTTTTGGTGAAATGAGTGTTCTCGAGGAGAA
CTTGGAGCTGATCAAGAGGCAGGTAGGCCTTGAACATGCAGAGGTCCTGTCTGCTTCTGATGAGGCTGCTCGTGCTAAAG
CTGGCGTGCATGCTTCTATGCTGGACAAGACCCCGCCTTCTCCTGGTGAGCCAGTAGCAATCTTCATGAGCAAACTAGAC
CTCGAAGCGCGGTGCTGAGCTTAACTGTCACAATGAAATTGCAAANTGAATAGTTAGGAGGAGTTCACTGAGATTTCCTT
ATTTTCATGCACAAGTTAAAGTTATGTTAGCTTGCAGCTTCTACAGTATCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51218.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis