Browse Element(s) Details


Os.187.1.S1_at

Description gb:D86925.1
DB_XREF= gi:1695697
TID=Os.187.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.187 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for C-type cyclin, complete cds.
PROD=C-type cyclin
FL= gb:D86925.1 gb:AK072415.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3268011/11G1/S-specific cyclin C-type, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32650Os.51218.1.S1_at11/119+19472098..19476734leucyl-tRNA synthetase family protein, expressed
LOC_Os09g32660Os.52571.1.A1_at11/119+19478243..19481680expressed protein
LOC_Os09g32670Os.18486.1.S1_at11/119+19485779..19487685NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g32680Os.187.1.S1_s_at11/119+19498552..19502722G1/S-specific cyclin C-type, putative, expressed
LOC_Os09g32680Os.187.1.S1_at11/119+19498552..19502722G1/S-specific cyclin C-type, putative, expressed
LOC_Os09g32690Os.6646.1.S1_at11/119+19502940..19506572Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g32690Os.8957.2.S1_x_at1/119+19502940..19506572Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g32700Os.27781.1.S1_at11/119+19506638..19508742expressed protein
LOC_Os09g32710Os.15502.1.S1_at11/119+19508826..19512260expressed protein
LOC_Os09g32730NANA9+19518988..19519617Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g32740Os.17307.1.S1_at11/119+19521706..19527377Ubiquitin carboxyl-terminal hydrolase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0004693molecular_functioncyclin-dependent protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.187.1.S1_at--930--10571Chr09:19502281..19502305 (25 bp)
TTCTATGACACCTACAAGATTGATC
LOC_Os09g32680
Os.187.1.S1_at--1144--8951Chr09:19502286..19502310 (25 bp)
TGACACCTACAAGATTGATCCTCAA
LOC_Os09g32680
Os.187.1.S1_at--494--1751Chr09:19502290..19502314 (25 bp)
ACCTACAAGATTGATCCTCAAAGAG
LOC_Os09g32680
Os.187.1.S1_at--459--5011Chr09:19502372..19502396 (25 bp)
GCAGACTGAGCCCTAGTTCAGTTGT
LOC_Os09g32680
Os.187.1.S1_at--244--5731Chr09:19502375..19502399 (25 bp)
GACTGAGCCCTAGTTCAGTTGTTAT
LOC_Os09g32680
Os.187.1.S1_at--128--4551Chr09:19502381..19502405 (25 bp)
GCCCTAGTTCAGTTGTTATCAGTCT
LOC_Os09g32680
Os.187.1.S1_at--698--10051Chr09:19502385..19502409 (25 bp)
TAGTTCAGTTGTTATCAGTCTGAGC
LOC_Os09g32680
Os.187.1.S1_at--656--10131Chr09:19502422..19502446 (25 bp)
TATGCTCGTACAACAGGAAATATGT
LOC_Os09g32680
Os.187.1.S1_at--795--6891Chr09:19502495..19502519 (25 bp)
GTATCAGAATTCAGAATTGCCCCTA
LOC_Os09g32680
Os.187.1.S1_at--534--8811Chr09:19502564..19502588 (25 bp)
TGTTGCAGCAGCTTGCGAGGCAAAT
LOC_Os09g32680
Os.187.1.S1_at--307--10691Chr09:19502576..19502600 (25 bp)
TTGCGAGGCAAATCATTTACAATGA
LOC_Os09g32680
Target Sequence 
TTCTATGACACCTACAAGATTGATCCTCAAAGAGGGCTCCCAGAGGACAAAATAGCCCCTGTGATGAACAAACTGCCTTC
AAAGGCCTAAAGCAGACTGAGCCCTAGTTCAGTTGTTATCAGTCTGAGCGTCAAATCACCTTATGCTCGTACAACAGGAA
ATATGTGTCANCNTCCTTGGAGAACTTTATATTTCAANGCCATATATATATATANNGTATCAGAATTCAGAATTGCCCCT
AACGAACGATTTAATTCAGAATTCCGAACTATATACAGCTGTTCCTGTTGCAGCAGCTTGCGAGGCAAATCATTTACAAT
GA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.187.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis