Browse Element(s) Details


Os.27781.1.S1_at

Description gb:AK073194.1
DB_XREF= gi:32983217
TID=Os.27781.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.27781 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033023G15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033023G15, full insert sequence.
FL= gb:AK073194.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3270011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32660Os.52571.1.A1_at11/119+19478243..19481680expressed protein
LOC_Os09g32670Os.18486.1.S1_at11/119+19485779..19487685NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g32680Os.187.1.S1_s_at11/119+19498552..19502722G1/S-specific cyclin C-type, putative, expressed
LOC_Os09g32680Os.187.1.S1_at11/119+19498552..19502722G1/S-specific cyclin C-type, putative, expressed
LOC_Os09g32690Os.6646.1.S1_at11/119+19502940..19506572Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g32690Os.8957.2.S1_x_at1/119+19502940..19506572Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g32700Os.27781.1.S1_at11/119+19506638..19508742expressed protein
LOC_Os09g32710Os.15502.1.S1_at11/119+19508826..19512260expressed protein
LOC_Os09g32730NANA9+19518988..19519617Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g32740Os.17307.1.S1_at11/119+19521706..19527377Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os09g32750NANA9+19532610..19540470expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27781.1.S1_at--143--2831Chr09:19507510..19507534 (25 bp)
AAGTTGCTCGGCTATATTATTGGAC
LOC_Os09g32700
Os.27781.1.S1_at--372--31Chr09:19507528..19507552 (25 bp)
ATTGGACGATATGGCGTTCCCTGGA
LOC_Os09g32700
Os.27781.1.S1_at--347--8371Chr09:19507540..19507564 (25 bp)
GGCGTTCCCTGGACAGTTAAGCGTA
LOC_Os09g32700
Os.27781.1.S1_at--88--6971Chr09:19507562..19507586 (25 bp)
GTAGCCATACTTACAGCGTCACTGA
LOC_Os09g32700
Os.27781.1.S1_at--1028--7091Chr09:19507579..19507603 (25 bp)
GTCACTGATGCCTCCACAAGTGTGG
LOC_Os09g32700
Os.27781.1.S1_at--883--2251Chr09:19507629..19507653 (25 bp)
AAATAGAGTCGGTGGTGCCTCCAAT
LOC_Os09g32700
Os.27781.1.S1_at--550--3511Chr09:19507700..19507724 (25 bp)
CATCCTTTGAAGTGTATCTACCGAA
LOC_Os09g32700
Os.27781.1.S1_at--657--2731Chr09:19507738..19507762 (25 bp)
AAGACATCCCCAGGAGACCCTAGTT
LOC_Os09g32700
Os.27781.1.S1_at--206--4311Chr09:19507756..19507780 (25 bp)
CCTAGTTTCGTCCTATGCCTATTAA
LOC_Os09g32700
Os.27781.1.S1_at--198--4951Chr09:19508491..19508515 (25 bp)
GCATTCCTCTGAAATTTTGCCATGT
LOC_Os09g32700
Os.27781.1.S1_at--669--1211Chr09:19508608..19508632 (25 bp)
AGTTTTTTCTGCTTCTGATCTTGTG
LOC_Os09g32700
Target Sequence 
AAGTTGCTCGGCTATATTATTGGACGATATGGCGTTCCCTGGACAGTTAAGCGTAGCCATACTTACAGCGTCACTGATGC
CTCCACAAGTGTGGTTGAAACTGATCAGATTCAGAGCTTAAATAGAGTCGGTGGTGCCTCCAATGACATAACTAAATTGC
TCAAGGAAATGTGCATAGATGATATGCATCCATCCTTTGAAGTGTATCTACCGAATAGCAAATTTAAGAAGACATCCCCA
GGAGACCCTAGTTTCGTCCTATGCCTATTAAGCAACAAACCACCATCAAGGGAAGAACTAGAAACCGTTGAAAACAAGTT
TGAGGGCATTCCTCTGAAATTTTGCCATGTTGACAACGGACGGGTCAGCTTCCTCTCCTCCAACAAAGCTGCTCTCCCTA
GTTTGCCCTGATGAGATAGCAGCAGGAGAATCTGTTACTGTTAGTTTTTTCTGCTTCTGATCTTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27781.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis