Browse Element(s) Details


Os.17307.1.S1_at

Description gb:AK067621.1
DB_XREF= gi:32977639
TID=Os.17307.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17307 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013108A13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013108A13, full insert sequence.
FL= gb:AK067621.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3274011/11Ubiquitin carboxyl-terminal hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32680Os.187.1.S1_s_at11/119+19498552..19502722G1/S-specific cyclin C-type, putative, expressed
LOC_Os09g32680Os.187.1.S1_at11/119+19498552..19502722G1/S-specific cyclin C-type, putative, expressed
LOC_Os09g32690Os.6646.1.S1_at11/119+19502940..19506572Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g32690Os.8957.2.S1_x_at1/119+19502940..19506572Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g32700Os.27781.1.S1_at11/119+19506638..19508742expressed protein
LOC_Os09g32710Os.15502.1.S1_at11/119+19508826..19512260expressed protein
LOC_Os09g32730NANA9+19518988..19519617Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g32740Os.17307.1.S1_at11/119+19521706..19527377Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os09g32750NANA9+19532610..19540470expressed protein
LOC_Os09g32760Os.15166.1.S1_at11/119+19541344..19545176Oleoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed
LOC_Os09g32770NANA9+19549496..19551995Auxin Efflux Carrier family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0000502cellular_componentproteasome complex (sensu Eukaryota)
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0004221molecular_functionubiquitin thiolesterase activity
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17307.1.S1_at--662--3131Chr09:19522243..19522267 (25 bp)
AATTATGTCTGCCATCCAGCAACAT
LOC_Os09g32740
Os.17307.1.S1_at--516--5151Chr09:19522225..19522249 (25 bp)
GCAACATCAATCAGTCTCTATCAGG
LOC_Os09g32740
Os.17307.1.S1_at--518--3431Chr09:19522150..19522174 (25 bp)
CAGAGGCTCAGTTAGTCTTCATACT
LOC_Os09g32740
Os.17307.1.S1_at--526--571Chr09:19522118..19522142 (25 bp)
ATCCATCAAGTCCATTTTGTTTCTT
LOC_Os09g32740
Os.17307.1.S1_at--1110--6571Chr09:19522092..19522116 (25 bp)
GATTGAGTCCAGTTGGCCTTGTTAC
LOC_Os09g32740
Os.17307.1.S1_at--257--4451Chr09:19522077..19522101 (25 bp)
GCCTTGTTACCATTTGTCTACTCAG
LOC_Os09g32740
Os.17307.1.S1_at--199--8391Chr09:19521945..19521969 (25 bp)
GGCGAGCTGCTCATACATATCTTGG
LOC_Os09g32740
Os.17307.1.S1_at--213--251Chr09:19521929..19521953 (25 bp)
ATATCTTGGCAAGGGCTCTGTGGAG
LOC_Os09g32740
Os.17307.1.S1_at--244--8831Chr09:19521842..19521866 (25 bp)
TGATTATTATGTCTCCAGTCTCCAC
LOC_Os09g32740
Os.17307.1.S1_at--962--1151Chr09:19521826..19521850 (25 bp)
AGTCTCCACCCCTAAATTTTGAGTG
LOC_Os09g32740
Os.17307.1.S1_at--778--311Chr09:19521791..19521815 (25 bp)
ATACTGTAACGTGCCTTAGGTCCAT
LOC_Os09g32740
Target Sequence 
AATTATGTCTGCCATCCAGCAACATCAATCAGTCTCTATCAGGGCATGTTCAAATGGCAAGCAATAGATAAGAAACGTCA
TTTTTTGGAAAATCAGAGGCTCAGTTAGTCTTCATACTAATTACTATCCATCAAGTCCATTTTGTTTCTTTGATTGAGTC
CAGTTGGCCTTGTTACCATTTGTCTACTCAGTCAAAGAGATTTTTCACAAGTGGACTTGANCAGTTAATCTGTTCATACT
GCCTACAGCCNTTTTGTCTTTTGAAGCATATTTTGGAGGTGTGCAAATGTTCAGAATTGGCGAGCTGCTCATACATATCT
TGGCAAGGGCTCTGTGGAGAAGCCCATAGATATTGTTTTACAACCAAACAAACAATGTTCACCTTAGTACTACATATTTT
TTGATTATTATGTCTCCAGTCTCCACCCCTAAATTTTGAGTGATGGGGGTGTATACTGTAACGTGCCTTAGGTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17307.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis