Browse Element(s) Details


Os.15166.1.S1_at

Description gb:AK061352.1
DB_XREF= gi:32971370
TID=Os.15166.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15166 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-303-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-303-G03, full insert sequence.
FL= gb:AK061352.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3276011/11Oleoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32730NANA9+19518988..19519617Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g32740Os.17307.1.S1_at11/119+19521706..19527377Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os09g32750NANA9+19532610..19540470expressed protein
LOC_Os09g32760Os.15166.1.S1_at11/119+19541344..19545176Oleoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed
LOC_Os09g32770NANA9+19549496..19551995Auxin Efflux Carrier family protein, expressed
LOC_Os09g32780OsAffx.13097.1.S1_s_at11/119+19555014..19559518Transposable element protein, putative, MuDR
LOC_Os09g32790NANA9+19560082..19560342hypothetical protein
LOC_Os09g32800Os.3736.1.S1_at11/119+19561865..19565427Proteasome subunit beta type 1, putative, expressed
LOC_Os09g32810Os.8665.1.S1_at11/119+19565734..19568514Ribulose-phosphate 3-epimerase, cytoplasmic isoform, putative, expressed
LOC_Os09g32810Os.8665.1.S1_s_at11/119+19565734..19568514Ribulose-phosphate 3-epimerase, cytoplasmic isoform, putative, expressed
LOC_Os09g32820Os.18062.1.S1_at11/119+19569628..19575197uridine kinase family protein, expressed
LOC_Os09g32820Os.53404.1.S1_at1/119+19569628..19575197uridine kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0009536cellular_componentplastid
GO:0000036molecular_functionacyl carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15166.1.S1_at--812--831Chr09:19541736..19541760 (25 bp)
ATGGATCCGCATTTGCTGCACCGCA
LOC_Os09g32760
Os.15166.1.S1_at--1023--5351Chr09:19541707..19541731 (25 bp)
GAAGAGCAGCGACAGTTCTTGCACT
LOC_Os09g32760
Os.15166.1.S1_at--664--5451Chr09:19541660..19541684 (25 bp)
GAACGAGATCAACCGTGGGCGCACC
LOC_Os09g32760
Os.15166.1.S1_at--745--5191Chr09:19541613..19541637 (25 bp)
GAATTCCCTAGTTTTGATCATACAG
LOC_Os09g32760
Os.15166.1.S1_at--310--8771Chr09:19541583..19541607 (25 bp)
TGTATTCTGATCCTTCCATTTGTTC
LOC_Os09g32760
Os.15166.1.S1_at--101--3591Chr09:19541567..19541591 (25 bp)
CATTTGTTCCATCATTTTGCTCTTG
LOC_Os09g32760
Os.15166.1.S1_at--249--10711Chr09:19541551..19541575 (25 bp)
TTGCTCTTGGTGTCTGGCATAGCCC
LOC_Os09g32760
Os.15166.1.S1_at--68--8291Chr09:19541536..19541560 (25 bp)
GGCATAGCCCTTTCAGAGAATCGGT
LOC_Os09g32760
Os.15166.1.S1_at--173--6871Chr09:19541452..19541476 (25 bp)
GTTTGTGACATTCGTCTTACCTGAA
LOC_Os09g32760
Os.15166.1.S1_at--72--3671Chr09:19541437..19541461 (25 bp)
CTTACCTGAAGTTGTGCGTTGCTGT
LOC_Os09g32760
Os.15166.1.S1_at--789--851Chr09:19541347..19541371 (25 bp)
ATGGCATGCCAAGTTTGGTTCTTCC
LOC_Os09g32760
Target Sequence 
ATGGATCCGCATTTGCTGCACCGCACCCAGAAGAGCAGCGACAGTTCTTGCACTGCTTAAGATTTGCTGGGAACGGGAAC
GAGATCAACCGTGGGCGCACCGTGTGGAGGAAGCTAGCTAGATGAATTCCCTAGTTTTGATCATACAGTCATATGTATTC
TGATCCTTCCATTTGTTCCATCATTTTGCTCTTGGTGTCTGGCATAGCCCTTTCAGAGAATCGGTTGTACCCCNAATTTT
GTGTTAATTTGTTACCTTTGTAATGTACCGTGGTAACAATTACANGTTTGTGACATTCGTCTTACCTGAAGTTGTGCGTT
GCTGTATACTTTGTACTAGTAGAATCAGTGTTTATGAATCTTCAAATAATTCTATCGGCAACAGATAGCNAATGGCATGC
CAAGTTTGGTTCTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15166.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis