Browse Element(s) Details


Os.3736.1.S1_at

Description gb:AB014058.1
DB_XREF= gi:3138798
TID=Os.3736.1
CNT=38
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3736 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for beta 6 subunit of 20S proteasome, complete cds.
PROD=beta 6 subunit of 20S proteasome
FL= gb:AB014058.1 gb:AK103136.1 gb:AK060884.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3280011/11Proteasome subunit beta type 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32750NANA9+19532610..19540470expressed protein
LOC_Os09g32760Os.15166.1.S1_at11/119+19541344..19545176Oleoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed
LOC_Os09g32770NANA9+19549496..19551995Auxin Efflux Carrier family protein, expressed
LOC_Os09g32780OsAffx.13097.1.S1_s_at11/119+19555014..19559518Transposable element protein, putative, MuDR
LOC_Os09g32790NANA9+19560082..19560342hypothetical protein
LOC_Os09g32800Os.3736.1.S1_at11/119+19561865..19565427Proteasome subunit beta type 1, putative, expressed
LOC_Os09g32810Os.8665.1.S1_at11/119+19565734..19568514Ribulose-phosphate 3-epimerase, cytoplasmic isoform, putative, expressed
LOC_Os09g32810Os.8665.1.S1_s_at11/119+19565734..19568514Ribulose-phosphate 3-epimerase, cytoplasmic isoform, putative, expressed
LOC_Os09g32820Os.18062.1.S1_at11/119+19569628..19575197uridine kinase family protein, expressed
LOC_Os09g32820Os.53404.1.S1_at1/119+19569628..19575197uridine kinase family protein, expressed
LOC_Os09g32830NANA9+19576951..19580595Purple acid phosphatase, putative
LOC_Os09g32840Os.26943.1.S1_at11/119+19581079..19585800Metallophosphatase, putative, expressed
LOC_Os09g32850NANA9+19586671..19587460hypothetical protein
LOC_Os09g32860NANA9+19589136..19592181F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005839cellular_componentproteasome core complex (sensu Eukaryota)
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3736.1.S1_at--99--7011Chr09:19564290..19564314 (25 bp)
GTACTACAAGCGATTCTTCCCATAT
LOC_Os09g32800
Os.3736.1.S1_at--1117--9071Chr09:19564543..19564567 (25 bp)
TGCTTTGATCATGCCAGTGCTGGAC
LOC_Os09g32800
Os.3736.1.S1_at--303--10211Chr09:19564593..19564790 (25 bp)
TATTACTCCCTGCAAGAGATGCCGT
LOC_Os09g32800
Os.3736.1.S1_at--567--6351Chr09:19564783..19564807 (25 bp)
GATGCCGTCACACCTTTGTCGGAGA
LOC_Os09g32800
Os.3736.1.S1_at--17--6551Chr09:19565050..19565074 (25 bp)
GATTATGTTCTTCAGTTACCGCAAA
LOC_Os09g32800
Os.3736.1.S1_at--785--2251Chr09:19565086..19565110 (25 bp)
AAATTTGCTTCGAACATTCTCCCTG
LOC_Os09g32800
Os.3736.1.S1_at--406--7611Chr09:19565119..19565143 (25 bp)
GGGAATCATGCCCTGAACTTGATAG
LOC_Os09g32800
Os.3736.1.S1_at--1086--231Chr09:19565140..19565164 (25 bp)
ATAGAAACGCCTGTGCTTTCTTGCT
LOC_Os09g32800
Os.3736.1.S1_at--734--10551Chr09:19565157..19565181 (25 bp)
TTCTTGCTTCTATTCTGTACCAGGA
LOC_Os09g32800
Os.3736.1.S1_at--529--6571Chr09:19565180..19565204 (25 bp)
GATTCTCCCAACCTGCTTTGTTGAA
LOC_Os09g32800
Os.3736.1.S1_at--167--10271Chr09:19565196..19565220 (25 bp)
TTTGTTGAACTAATCGCTGCCTTGA
LOC_Os09g32800
Target Sequence 
GTACTACAAGCGATTCTTCCCATATTATGCTTTCAATGTACTTGGTGGGCTTGATAGTGAAGGGAAAGGATGTGTTTTCA
CCTATGATGCAGTTGGGTCCTATGAGAGGACTGGCTACAGTGCACAGGGAACAGGATCTGCTTTGATCATGCCAGTGCTG
GACAACCAANCTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAGATGCCGTCACACCTTTGTCGGAGACAGAGGCGG
TCGATTTAGTGAAGGATGTGTTTGCATCGGCAACTGAGAGGGACATCTACACTGGTGATAAGCTGGAGATAGTTGTCATC
AACAAAGCTGGGACGAAGCGAGAGTACATCGACCTGAGGAAGGACTAGATCGACGATTATGTTCTTCAGTTACCGCAAAT
TTGCATCAACAAATTTGCTTCGAACATTCTCCCTGATACGCCAGGGAATCATGCCCTGAACTTGATAGAAACGCCTGTGC
TTTCTTGCTTCTATTCTGTACCAGGATTCTCCCAACCTGCTTTGTTGAACTAATCGCTGCCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3736.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis