Browse Element(s) Details


Os.8665.1.S1_at

Description gb:AF189365.1
DB_XREF= gi:6007802
TID=Os.8665.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.8665 (NCBI UniGene Cluster)
DEF=Oryza sativa D-ribulose-5-phosphate 3-epimerase mRNA, complete cds.
PROD=D-ribulose-5-phosphate 3-epimerase
FL= gb:AF189365.1 gb:AK069451.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3281011/11Ribulose-phosphate 3-epimerase, cytoplasmic isoform, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32760Os.15166.1.S1_at11/119+19541344..19545176Oleoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed
LOC_Os09g32770NANA9+19549496..19551995Auxin Efflux Carrier family protein, expressed
LOC_Os09g32780OsAffx.13097.1.S1_s_at11/119+19555014..19559518Transposable element protein, putative, MuDR
LOC_Os09g32790NANA9+19560082..19560342hypothetical protein
LOC_Os09g32800Os.3736.1.S1_at11/119+19561865..19565427Proteasome subunit beta type 1, putative, expressed
LOC_Os09g32810Os.8665.1.S1_at11/119+19565734..19568514Ribulose-phosphate 3-epimerase, cytoplasmic isoform, putative, expressed
LOC_Os09g32810Os.8665.1.S1_s_at11/119+19565734..19568514Ribulose-phosphate 3-epimerase, cytoplasmic isoform, putative, expressed
LOC_Os09g32820Os.18062.1.S1_at11/119+19569628..19575197uridine kinase family protein, expressed
LOC_Os09g32820Os.53404.1.S1_at1/119+19569628..19575197uridine kinase family protein, expressed
LOC_Os09g32830NANA9+19576951..19580595Purple acid phosphatase, putative
LOC_Os09g32840Os.26943.1.S1_at11/119+19581079..19585800Metallophosphatase, putative, expressed
LOC_Os09g32850NANA9+19586671..19587460hypothetical protein
LOC_Os09g32860NANA9+19589136..19592181F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004750molecular_functionribulose-phosphate 3-epimerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8665.1.S1_at--1138--3031Chr09:19567667..19567691 (25 bp)
AATCCTGTTGAATTGGTTCTTGTTA
LOC_Os09g32810
Os.8665.1.S1_at--123--571Chr09:19567668..19567692 (25 bp)
ATCCTGTTGAATTGGTTCTTGTTAT
LOC_Os09g32810
Os.8665.1.S1_at--836--10731Chr09:19567674..19567698 (25 bp)
TTGAATTGGTTCTTGTTATGACAGT
LOC_Os09g32810
Os.8665.1.S1_at--618--31Chr09:19567678..19567702 (25 bp)
ATTGGTTCTTGTTATGACAGTTGAA
LOC_Os09g32810
Os.8665.1.S1_at--1086--5631Chr09:19567693..19567717 (25 bp)
GACAGTTGAACCTGGCTTTGGTGGT
LOC_Os09g32810
Os.8665.1.S1_at--803--2131Chr09:19567694..19567718 (25 bp)
ACAGTTGAACCTGGCTTTGGTGGTC
LOC_Os09g32810
Os.8665.1.S1_at--283--6651Chr09:19567697..19567721 (25 bp)
GTTGAACCTGGCTTTGGTGGTCAGA
LOC_Os09g32810
Os.8665.1.S1_at--812--10711Chr09:19567698..19567722 (25 bp)
TTGAACCTGGCTTTGGTGGTCAGAA
LOC_Os09g32810
Os.8665.1.S1_at--710--5431Chr09:19567700..19567724 (25 bp)
GAACCTGGCTTTGGTGGTCAGAAGT
LOC_Os09g32810
Os.8665.1.S1_at--1156--1751Chr09:19567702..19567726 (25 bp)
ACCTGGCTTTGGTGGTCAGAAGTTT
LOC_Os09g32810
Os.8665.1.S1_at--420--4271Chr09:19567703..19567727 (25 bp)
CCTGGCTTTGGTGGTCAGAAGTTTA
LOC_Os09g32810
Target Sequence 
AATCCTGTTGAATTGGTTCTTGTTATGACAGTTGAACCTGGCTTTGGTGGTCAGAAGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8665.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis