Browse Element(s) Details


Os.51236.1.S1_x_at

Description gb:AK062307.1
DB_XREF= gi:32972325
TID=Os.51236.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.51236 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-B01, full insert sequence.
FL= gb:AK062307.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g434041/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g43370NANA11+25674646..25680747retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43380OsAffx.21897.5.S1_x_at4/1111+25681064..25684004retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43390Os.49941.1.S1_at11/1111+25688350..25691231expressed protein
LOC_Os11g43400Os.20602.2.S1_x_at9/1111+25693857..25695935hAT family dimerisation domain containing protein
LOC_Os11g43404Os.32717.1.S1_at11/1111+25696774..25699226expressed protein
LOC_Os11g43404Os.51236.1.S1_x_at1/1111+25696774..25699226expressed protein
LOC_Os11g43410OsAffx.19352.1.S1_at11/1111+25706256..25708996NB-ARC domain containing protein, expressed
LOC_Os11g43420Os.53698.1.S1_at8/1111+25710912..25713973NB-ARC domain containing protein, expressed
LOC_Os11g43430Os.14491.2.S1_x_at1/1111+25718811..25723864transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g43430Os.47463.1.S1_x_at1/1111+25718811..25723864transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51236.1.S1_x_at--1005--3652Chr12:26527902..26527926 (25 bp)
CTTTCCCTTACCTCAAATGATTCTC
NONE
Os.51236.1.S1_x_at--814--2992Chr12:26527887..26527911 (25 bp)
AATGATTCTCTTATGGTTTGTGGCT
NONE
Os.51236.1.S1_x_at--1155--9512Chr12:26527881..26527905 (25 bp)
TCTCTTATGGTTTGTGGCTGGAATG
NONE
Os.51236.1.S1_x_at--183--3913Chr11:25697371..25697391 (21 bp)
CTGGAATGGAGCAATCGATTTGGTA
LOC_Os11g43404
Os.51236.1.S1_x_at--990--7091Chr07:65480..65504 (25 bp)
GTCAGTTAGTGCAAGCTACAAGACT
NONE
Os.51236.1.S1_x_at--612--1572Chr12:26527820..26527844 (25 bp)
AGCTACAAGACTTGGCCTTGTGCTG
NONE
Os.51236.1.S1_x_at--508--1413Chr05:16985832..16985852 (21 bp)
AGACTTGGCCTTGTGCTGCTGGAGC
NONE
Os.51236.1.S1_x_at--810--8072Chr12:26527793..26527817 (25 bp)
GGAGCAGAGGTTGGCTGCCTACCAC
NONE
Os.51236.1.S1_x_at--770--1713Chr04:22962971..22963117 (24 bp)
ACCACTGCTGTGTTGTGTGCTGCGA
NONE
Os.51236.1.S1_x_at--396--6632Chr12:26527762..26527786 (25 bp)
GTTGTGTGCTGCGACATTTAATCAC
NONE
Os.51236.1.S1_x_at--289--431Chr07:65356..65380 (25 bp)
ATCTTATGTTAAATGGCAGGAACTC
NONE
Target Sequence 
CTTTCCCTTACCTCAAATGATTCTCTTATGGTTTGTGGCTGGAATGGAGCAATCGATTTGGTAAAAAATGTCAGTTAGTG
CAAGCTACAAGACTTGGCCTTGTGCTGCTGGAGCAGAGGTTGGCTGCCTACCACTGCTGTGTTGTGTGCTGCGACATTTA
ATCACCAAACAAGTACTAATAATCTACTGATTTATCTTATGTTAAATGGCAGGAACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51236.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis