Browse Element(s) Details


Os.51279.1.S1_at

Description gb:AK062413.1
DB_XREF= gi:32972431
TID=Os.51279.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.51279 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-102-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-F04, full insert sequence.
FL= gb:AK062413.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g263204/11Jacalin-like lectin domain containing protein, expressed
LOC_Os04g123904/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26270NANA4+15294109..15294662hypothetical protein
LOC_Os04g26280Os.55837.1.S1_x_at1/114+15294961..15296747hypothetical protein
LOC_Os04g26290NANA4+15297628..15302794retrotransposon protein, putative, unclassified
LOC_Os04g26300NANA4+15307743..15311078transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26310Os.14491.2.S1_x_at3/114+15314123..15317358transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26310Os.47463.1.S1_x_at3/114+15314123..15317358transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26320Os.51279.1.S1_at4/114+15317832..15319762Jacalin-like lectin domain containing protein, expressed
LOC_Os04g26330OsAffx.26161.1.S1_at10/114+15325710..15327348hypothetical protein
LOC_Os04g26340Os.52633.1.S1_at5/114+15334222..15340129retrotransposon protein, putative, unclassified
LOC_Os04g26340Os.1189.1.S1_at1/114+15334222..15340129retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007155biological_processcell adhesion
GO:0009908biological_processflower development
GO:0010169cellular_componentmyrosinase complex
GO:0005529molecular_functionsugar binding
GO:0010180molecular_functionthioglucosidase binding activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51279.1.S1_at--528--6732Chr04:15318237..15318261 (25 bp)
GTTCTATGATAGCATGCGCAGGCAG
LOC_Os04g26320
Os.51279.1.S1_at--632--9492Chr04:15318186..15318210 (25 bp)
TCTGCGCATGGACCTGCGTCAAATA
LOC_Os04g26320
Os.51279.1.S1_at--1119--2732Chr04:15318142..15318166 (25 bp)
AAGAAGTGGAACGTGGGCGCCTACA
LOC_Os04g26320
Os.51279.1.S1_at--15--1551NONE
AGCTTCGAGTGGATATGCCGCCGGA
NONE
Os.51279.1.S1_at--450--1831Chr04:15318030..15318054 (25 bp)
ACGCGACCTGCGAGTGGAGCATCAA
LOC_Os04g26320
Os.51279.1.S1_at--1041--10731Chr04:6814054..6814077 (24 bp)
TTGCAGCAACTGGAACGCGGGCGTC
LOC_Os04g12390
Os.51279.1.S1_at--889--931NONE
AGGCAAAGCGCCAGACACTTGAGGA
NONE
Os.51279.1.S1_at--618--6331NONE
GATGCAGCAACTGGTACACGGGCGT
NONE
Os.51279.1.S1_at--1009--9851NONE
TACACGGGCGTCATTTACAGCAGAT
NONE
Os.51279.1.S1_at--47--9051NONE
TGCAGCAAATGGTACGCGAGCGTCA
NONE
Os.51279.1.S1_at--699--7511NONE
GTGGATGCGGGAACCCTTTGCAGTC
NONE
Target Sequence 
GTTCTATGATAGCATGCGCAGGCAGGGCGTCCGCGTTTACCGGGCNTCGCCTCTGCGCATGGACCTGCGTCAAATAGAAG
AAGAGAAAAAGAAGGAAGAAGTGGAACGTGGGCGCCTACAGAAGGAGATCGAGGAGGGGCGAGAAAGTCTTCGGAACTTA
CGATTGAAGCTTCGAGTGGATATGCCGCCGGATCGGAGAAAACGCCTGATAGGACGCGACCTGCGAGTGGAGCATCAAGA
AATCGAACGTCAGTTACAAGAGTTGCAGCAACTGGAACGCGGGCGTCAGGCAAAGCGCCAGACACTTGAGGAGCTGCAAG
TGGAGCAACAAGAAATCGAACGTCAGTTACAAGAGATGCAGCAACTGGTACACGGGCGTCATTTACAGCAGATGCAGCAA
ATGGTACGCGAGCGTCAGCAACTGGAGGAACGCGAGCGTCAGCAACTGGAGGAACGCGATCGCTACGAGCGCTGGTGGAT
GCGGGAACCCTTTGCAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51279.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis