Browse Element(s) Details


Os.51337.1.S1_at

Description gb:AK062590.1
DB_XREF= gi:32972608
TID=Os.51337.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51337 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-100-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-G10, full insert sequence.
FL= gb:AK062590.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3933011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39270NANA6+23309218..23310948Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os06g39280NANA6+23313017..23314276retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g39290NANA6+23315098..23315872hypothetical protein
LOC_Os06g39300NANA6+23320521..23323294hypothetical protein
LOC_Os06g39310OsAffx.20387.1.S1_x_at1/116+23325561..23327282transposon protein, putative, unclassified
LOC_Os06g39320NANA6+23327796..23329486retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g39330Os.51337.1.S1_at11/116+23332386..23334033UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g39344Os.17385.1.S1_at11/116+23342944..23349820enoyl-CoA hydratase/isomerase family protein, putative, expressed
LOC_Os06g39344Os.6374.1.S1_at11/116+23342944..23349820enoyl-CoA hydratase/isomerase family protein, putative, expressed
LOC_Os06g39360OsAffx.28005.1.S1_at11/116+23354098..23360598NB-ARC domain containing protein
LOC_Os06g39360Os.53902.1.S1_x_at1/116+23354098..23360598NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009920biological_processcell plate formation (sensu Magnoliophyta)
GO:0009524cellular_componentphragmoplast
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51337.1.S1_at--888--5991Chr06:23332819..23332843 (25 bp)
GAGAGCATCGCGTCGGGCGTGCCCA
LOC_Os06g39330
Os.51337.1.S1_at--304--4151Chr06:23332782..23332806 (25 bp)
CGCGGATGTCGGACCAGCAGATGAA
LOC_Os06g39330
Os.51337.1.S1_at--95--9451Chr06:23332774..23332798 (25 bp)
TCGGACCAGCAGATGAACGCGCGGC
LOC_Os06g39330
Os.51337.1.S1_at--765--6131Chr06:23332572..23332596 (25 bp)
GAGGGTCGTCGGATCGTAATCTGAC
LOC_Os06g39330
Os.51337.1.S1_at--860--7171Chr06:23332565..23332589 (25 bp)
GTCGGATCGTAATCTGACGGCCTTC
LOC_Os06g39330
Os.51337.1.S1_at--644--511Chr06:23332560..23332584 (25 bp)
ATCGTAATCTGACGGCCTTCGTGGA
LOC_Os06g39330
Os.51337.1.S1_at--991--6131Chr06:23332537..23332561 (25 bp)
GAGGGTGCCAGAAGTGTCATTTGAA
LOC_Os06g39330
Os.51337.1.S1_at--1019--7651Chr06:23332459..23332483 (25 bp)
GGGATCCTAGGGTCTTCCCTTGTTG
LOC_Os06g39330
Os.51337.1.S1_at--685--4311Chr06:23332442..23332466 (25 bp)
CCTTGTTGGTTTGGCTGTTTGTTCA
LOC_Os06g39330
Os.51337.1.S1_at--901--8331Chr06:23332430..23332454 (25 bp)
GGCTGTTTGTTCACTTGTATGTACA
LOC_Os06g39330
Os.51337.1.S1_at--1077--3611Chr06:23332417..23332441 (25 bp)
CTTGTATGTACAACCTCTACTGAAC
LOC_Os06g39330
Target Sequence 
GAGAGCATCGCGTCGGGCGTGCCCATGGTGGGCGTCCCGCGGATGTCGGACCAGCAGATGAACGCGCGGCTCGTCGAGCG
CGACTGGCGCGTCGGCGTGCGCGCGGAGGTGGACGGCGGCGGCGGCGTGCTGCGCGCGGCGGAGCTGAGGCGGCGGGTCG
AGGAGGTGATGGGAGACGGGGAGGCGGCGGAGGTGCGGCGCTCGGCGGCGGCGTGGAAGCGAGCGGTGGCGGAGGCTCTA
GGGAAAGGAGGGTCGTCGGATCGTAATCTGACGGCCTTCGTGGAGGGTGCCAGAAGTGTCATTTGAAAACGACATAATTT
GAAAACGTTATAAGATGTATTTTAATTTGAAAACGATTTGGGGATCCTAGGGTCTTCCCTTGTTGGTTTGGCTGTTTGTT
CACTTGTATGTACAACCTCTACTGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51337.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis