Browse Element(s) Details


OsAffx.28005.1.S1_at

Description tigr:9634.m03764
TID=OsAffx.28005.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to NBS-LRR disease resistance protein homologue
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3936011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39320NANA6+23327796..23329486retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g39330Os.51337.1.S1_at11/116+23332386..23334033UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g39344Os.17385.1.S1_at11/116+23342944..23349820enoyl-CoA hydratase/isomerase family protein, putative, expressed
LOC_Os06g39344Os.6374.1.S1_at11/116+23342944..23349820enoyl-CoA hydratase/isomerase family protein, putative, expressed
LOC_Os06g39360OsAffx.28005.1.S1_at11/116+23354098..23360598NB-ARC domain containing protein
LOC_Os06g39360Os.53902.1.S1_x_at1/116+23354098..23360598NB-ARC domain containing protein
LOC_Os06g39370Os.8945.1.S1_at11/116+23366379..23367832Kelch motif family protein, expressed
LOC_Os06g39380OsAffx.15840.1.S1_at10/116+23371312..23372382hypothetical protein
LOC_Os06g39390OsAffx.28006.1.S1_at11/116+23378161..23380411Transferase family protein, expressed
LOC_Os06g39400OsAffx.31727.1.S1_at6/116+23381208..23387390retrotransposon protein, putative, unclassified
LOC_Os06g39400OsAffx.27238.1.S1_at1/116+23381208..23387390retrotransposon protein, putative, unclassified
LOC_Os06g39400Os.51311.1.S1_at1/116+23381208..23387390retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006952biological_processdefense response
GO:0009618biological_processresponse to pathogenic bacteria
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28005.1.S1_at--1032--2671Chr06:23354635..23354659 (25 bp)
AAGCGGGAGCATGTGTTCCCTCCTC
LOC_Os06g39360
OsAffx.28005.1.S1_at--703--8331Chr06:23354588..23354612 (25 bp)
TGGCTGTCCATAAAACTCCCGAATT
LOC_Os06g39360
OsAffx.28005.1.S1_at--446--5211Chr06:23354568..23354592 (25 bp)
GAATTCTTTGTTGGGTCCAAGCCAT
LOC_Os06g39360
OsAffx.28005.1.S1_at--222--7671Chr06:23354507..23354531 (25 bp)
GGGTATTTGTTGAGCCTACTTGCAG
LOC_Os06g39360
OsAffx.28005.1.S1_at--425--8991Chr06:23354444..23354468 (25 bp)
TGAACCACAAGGTAGAGCGCTTCAC
LOC_Os06g39360
OsAffx.28005.1.S1_at--455--3771Chr06:23354382..23354406 (25 bp)
CTCGAGGTCCTTATATTTGTGCAAT
LOC_Os06g39360
OsAffx.28005.1.S1_at--1056--7331Chr06:23354364..23354388 (25 bp)
GTGCAATGCTCGAAGCTGCAGTCTC
LOC_Os06g39360
OsAffx.28005.1.S1_at--626--9311Chr06:23354339..23354363 (25 bp)
TCCCTGCTGGGTTACATAGACTCAC
LOC_Os06g39360
OsAffx.28005.1.S1_at--223--10031Chr06:23354300..23354324 (25 bp)
TAGAGATCGCATACTGTCCAAACAT
LOC_Os06g39360
OsAffx.28005.1.S1_at--951--3271Chr06:23354282..23354306 (25 bp)
CAAACATTCATTCGCTGCCCAAGGG
LOC_Os06g39360
OsAffx.28005.1.S1_at--205--7571Chr06:23354260..23354284 (25 bp)
GGGCTGTTTTCCGAGTTCACTAGAA
LOC_Os06g39360
Target Sequence 
AAGCGGGAGCATGTGTTCCCTCCTCACCCAAGGCCACCTTAGAGTGCTGGCTGTCCATAAAACTCCCGAATTCTTTGTTG
GGTCCAAGCCATCGGGGCTGCAACAGCTCTACATGGATGACATCGTAGGGGTATTTGTTGAGCCTACTTGCAGGCTTCTC
TCTTCATCACTCACCAAGTTAAGCTTAAGCATGAACCACAAGGTAGAGCGCTTCACCAAGGAGCAAAACATGGCCCTTCA
GCTGCTCTCCTCCCTCGAGGTCCTTATATTTGTGCAATGCTCGAAGCTGCAGTCTCTCCCTGCTGGGTTACATAGACTCA
CCAGTCTCAAGAGATTAGAGATCGCATACTGTCCAAACATTCATTCGCTGCCCAAGGGCTGTTTTCCGAGTTCACTAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28005.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis