Browse Element(s) Details


OsAffx.15840.1.S1_at

Description tigr:9634.m03766
TID=OsAffx.15840.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3938010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39344Os.17385.1.S1_at11/116+23342944..23349820enoyl-CoA hydratase/isomerase family protein, putative, expressed
LOC_Os06g39344Os.6374.1.S1_at11/116+23342944..23349820enoyl-CoA hydratase/isomerase family protein, putative, expressed
LOC_Os06g39360OsAffx.28005.1.S1_at11/116+23354098..23360598NB-ARC domain containing protein
LOC_Os06g39360Os.53902.1.S1_x_at1/116+23354098..23360598NB-ARC domain containing protein
LOC_Os06g39370Os.8945.1.S1_at11/116+23366379..23367832Kelch motif family protein, expressed
LOC_Os06g39380OsAffx.15840.1.S1_at10/116+23371312..23372382hypothetical protein
LOC_Os06g39390OsAffx.28006.1.S1_at11/116+23378161..23380411Transferase family protein, expressed
LOC_Os06g39400OsAffx.31727.1.S1_at6/116+23381208..23387390retrotransposon protein, putative, unclassified
LOC_Os06g39400OsAffx.27238.1.S1_at1/116+23381208..23387390retrotransposon protein, putative, unclassified
LOC_Os06g39400Os.51311.1.S1_at1/116+23381208..23387390retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15840.1.S1_at--1084--511Chr06:23371343..23371367 (25 bp)
ATCGACGGTGGGAGGTCGGTGACAA
LOC_Os06g39380
OsAffx.15840.1.S1_at--735--7251NONE
GTCCACATGGACAGAAAAACCACGG
NONE
OsAffx.15840.1.S1_at--1133--8111Chr06:23372251..23372275 (25 bp)
GGACAGAAAAACCACGGCCTAATAG
LOC_Os06g39380
OsAffx.15840.1.S1_at--207--2631Chr06:23372260..23372284 (25 bp)
AACCACGGCCTAATAGACCCAGACG
LOC_Os06g39380
OsAffx.15840.1.S1_at--126--4431Chr06:23372267..23372291 (25 bp)
GCCTAATAGACCCAGACGCCATGTT
LOC_Os06g39380
OsAffx.15840.1.S1_at--826--9751Chr06:23372270..23372294 (25 bp)
TAATAGACCCAGACGCCATGTTATC
LOC_Os06g39380
OsAffx.15840.1.S1_at--714--5811Chr06:23372275..23372299 (25 bp)
GACCCAGACGCCATGTTATCAGAGA
LOC_Os06g39380
OsAffx.15840.1.S1_at--232--1391Chr06:23372280..23372304 (25 bp)
AGACGCCATGTTATCAGAGACGAGC
LOC_Os06g39380
OsAffx.15840.1.S1_at--1054--10411Chr06:23372290..23372314 (25 bp)
TTATCAGAGACGAGCGACATCCGCC
LOC_Os06g39380
OsAffx.15840.1.S1_at--806--5991Chr06:23372296..23372320 (25 bp)
GAGACGAGCGACATCCGCCAAGCAG
LOC_Os06g39380
OsAffx.15840.1.S1_at--634--551Chr06:23372308..23372332 (25 bp)
ATCCGCCAAGCAGACAAGGGTGGGA
LOC_Os06g39380
Target Sequence 
ATCGACGGTGGGAGGTCGGTGACAAGGGGTGTCCACATGGACAGAAAAACCACGGCCTAATAGACCCAGACGCCATGTTA
TCAGAGACGAGCGACATCCGCCAAGCAGACAAGGGTGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15840.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis