Browse Element(s) Details


Os.8945.1.S1_at

Description gb:AK072246.1
DB_XREF= gi:32982269
TID=Os.8945.1
CNT=60
FEA=FLmRNA
TIER=FL+Stack
STK=21
UG=Os.8945 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023001I15, full insert sequence.
FL= gb:AK072246.1 gb:AK065435.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3937011/11Kelch motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39344Os.17385.1.S1_at11/116+23342944..23349820enoyl-CoA hydratase/isomerase family protein, putative, expressed
LOC_Os06g39344Os.6374.1.S1_at11/116+23342944..23349820enoyl-CoA hydratase/isomerase family protein, putative, expressed
LOC_Os06g39360OsAffx.28005.1.S1_at11/116+23354098..23360598NB-ARC domain containing protein
LOC_Os06g39360Os.53902.1.S1_x_at1/116+23354098..23360598NB-ARC domain containing protein
LOC_Os06g39370Os.8945.1.S1_at11/116+23366379..23367832Kelch motif family protein, expressed
LOC_Os06g39380OsAffx.15840.1.S1_at10/116+23371312..23372382hypothetical protein
LOC_Os06g39390OsAffx.28006.1.S1_at11/116+23378161..23380411Transferase family protein, expressed
LOC_Os06g39400OsAffx.31727.1.S1_at6/116+23381208..23387390retrotransposon protein, putative, unclassified
LOC_Os06g39400OsAffx.27238.1.S1_at1/116+23381208..23387390retrotransposon protein, putative, unclassified
LOC_Os06g39400Os.51311.1.S1_at1/116+23381208..23387390retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8945.1.S1_at--383--4011Chr06:23367279..23367303 (25 bp)
CGTCCAAGAAGGCTTCGTCGACGAC
LOC_Os06g39370
Os.8945.1.S1_at--729--5771Chr06:23367298..23367322 (25 bp)
GACGACGGCGCGTGCCCGAGAACCT
LOC_Os06g39370
Os.8945.1.S1_at--783--4231Chr06:23367335..23367359 (25 bp)
CCGAGGCCGGAGACCGCATGTACAT
LOC_Os06g39370
Os.8945.1.S1_at--912--7491Chr06:23367493..23367517 (25 bp)
GTGGTCATCGGGTCCGACTGCCACG
LOC_Os06g39370
Os.8945.1.S1_at--219--1731Chr06:23367524..23367548 (25 bp)
ACCAGACGGTGTACACGCTGCGGGA
LOC_Os06g39370
Os.8945.1.S1_at--13--4531Chr06:23367616..23367640 (25 bp)
GCCGCCTGCCTTCTAGAAATCTGAA
LOC_Os06g39370
Os.8945.1.S1_at--1025--10651Chr06:23367660..23367684 (25 bp)
TTCCGTGTATAATTGTGTATCCATC
LOC_Os06g39370
Os.8945.1.S1_at--680--7431Chr06:23367674..23367698 (25 bp)
GTGTATCCATCTATGTACATATCAC
LOC_Os06g39370
Os.8945.1.S1_at--800--3311Chr06:23367696..23367720 (25 bp)
CACATATGTGTGAGTAGCAGAGTTC
LOC_Os06g39370
Os.8945.1.S1_at--166--1531Chr06:23367711..23367735 (25 bp)
AGCAGAGTTCGAGTTTGTACAGCAA
LOC_Os06g39370
Os.8945.1.S1_at--9--10591Chr06:23367718..23367742 (25 bp)
TTCGAGTTTGTACAGCAACTTTTGC
LOC_Os06g39370
Target Sequence 
CGTCCAAGAAGGCTTCGTCGACGACGGCGCGTGCCCGAGAACCTGCAGCGCCGCCCCCGAGGCCGGAGACCGCATGTACA
TGCTCCGCGACGGGCACCTNGTGGCGCGCCANGGCGCCATCTCCTCCGCCCCCGCGGCGTGGCGGCCCGTGGCGCCGGTG
CCGGAGGACGCGCGCACCGCGGCGGCCGTTTCCGTCATCCCCGACGGCCGCGTCGTGGTCATCGGGTCCGACTGCCACGG
CGGCGACCAGACGGTGTACACGCTGCGGGAGGAGGCCGGCAAGCCCGCGTCGTGGGCGCGCGCGCCGGCGCCGCCCGAGT
TCTCCGGGCACGTCCAGGCCGCCTGCCTTCTAGAAATCTGAAGCGTATTACAGAAACTAAATTCCGTGTATAATTGTGTA
TCCATCTATGTACATATCACATATGTGTGAGTAGCAGAGTTCGAGTTTGTACAGCAACTTTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8945.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis