Browse Element(s) Details


Os.51449.1.S1_at

Description gb:AK062829.1
DB_XREF= gi:32972847
TID=Os.51449.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51449 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-G04, full insert sequence.
FL= gb:AK062829.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4327411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43220NANA1+25017379..25022910hypothetical protein
LOC_Os01g43230Os.37184.1.S1_at11/111+25022608..25024761expressed protein
LOC_Os01g43230OsAffx.23641.1.S1_at11/111+25022608..25024761expressed protein
LOC_Os01g43240OsAffx.23642.1.S1_at10/111+25026048..25028192hypothetical protein
LOC_Os01g43250Os.663.1.S1_at11/111+25030619..25035759seh1, putative, expressed
LOC_Os01g43260OsAffx.23643.1.S1_at11/111+25036563..25037242hypothetical protein
LOC_Os01g43270OsAffx.23644.1.S1_x_at11/111+25039018..25040460UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os01g43270OsAffx.23644.1.S1_at11/111+25039018..25040460UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os01g43274Os.51449.1.S1_at11/111+25041107..25041649expressed protein
LOC_Os01g43280Os.30439.1.S1_at11/111+25065940..25067834UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g43280OsAffx.23644.1.S1_x_at1/111+25065940..25067834UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51449.1.S1_at--719--10412Chr01:25041152..25041176 (25 bp)
TTATTCATCTTTGCTGGCGGCGCAT
LOC_Os01g43274
Os.51449.1.S1_at--262--8391Chr01:25041170..25041194 (25 bp)
GGCGCATCTAAGTGACTGCCAGCGA
LOC_Os01g43274
Os.51449.1.S1_at--638--672Chr01:25041197..25041221 (25 bp)
ATGAACATATCTTTGCTGGCGGCCG
LOC_Os01g43274
Os.51449.1.S1_at--850--1911Chr01:25041227..25041251 (25 bp)
ACGTGGCTGCTAGTGAAGATCCATT
LOC_Os01g43274
Os.51449.1.S1_at--644--575Chr08:19037971..19037990 (20 bp)
ATCCATTTTTGCTGGCGGTCAGTGC
NONE
Os.51449.1.S1_at--59--9952Chr01:25041285..25041309 (25 bp)
TACGATCTTGCTGGCGGTTTTTGTA
LOC_Os01g43274
Os.51449.1.S1_at--20--3471Chr01:25041363..25041387 (25 bp)
CAGTGATAGTTCAGACTCAGCAGCA
LOC_Os01g43274
Os.51449.1.S1_at--128--7431Chr01:25041389..25041413 (25 bp)
GTGTTCTTTTCACGTTTATGGCAGA
LOC_Os01g43274
Os.51449.1.S1_at--839--10371Chr01:25041429..25041453 (25 bp)
TTTTCACGTCACAGTCTCATGGATT
LOC_Os01g43274
Os.51449.1.S1_at--776--7631Chr01:25041486..25041510 (25 bp)
GGGACGTACACTCTTGGTATACATA
LOC_Os01g43274
Os.51449.1.S1_at--291--13710Chr11:12249125..12249149 (25 bp)
AGAGCGGTGTTGATTGAGCCACGAT
NONE
Target Sequence 
TTATTCATCTTTGCTGGCGGCGCATCTAAGTGACTGCCAGCGAAAATGAACATATCTTTGCTGGCGGCCGGTATAACGTG
GCTGCTAGTGAAGATCCATTTTTGCTGGCGGTCAGTGCCCCCCACCCCCTTGTTACGATCTTGCTGGCGGTTTTTGTATT
TTTCCGCCAGCGAAAATCATAGACCAACGTTATGAAAAATCGTTTTTTTAGCAGTGATAGTTCAGACTCAGCAGCAAGTG
TTCTTTTCACGTTTATGGCAGAGCACTGGAAATGTTCTTTTCACGTCACAGTCTCATGGATTAAATATTGGAAGTGTTTT
TCTTCCACTCGGGGGGGACGTACACTCTTGGTATACATAGCATTTAAAATAATTGTAACATTCCGGATATTTAGCTATAG
TCTTAATCATGCTAATAATTTGATCACACTAGCTGAGAGCGGTGTTGATTGAGCCACGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51449.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis