Browse Element(s) Details


Os.30439.1.S1_at

Description gb:AK108846.1
DB_XREF= gi:32994055
TID=Os.30439.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30439 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative UTP-glucose glucosyltransferase (P0407B12.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-152-A02, full insert sequence.
FL= gb:AK108846.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4328011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43274Os.51449.1.S1_at11/111+25041107..25041649expressed protein
LOC_Os01g43280Os.30439.1.S1_at11/111+25065940..25067834UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g43280OsAffx.23644.1.S1_x_at1/111+25065940..25067834UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g43290NANA1+25068567..25069076hypothetical protein
LOC_Os01g43300NANA1+25071057..25072067retrotransposon protein, putative, unclassified
LOC_Os01g43310Os.28943.1.S1_x_at2/111+25072694..25073026retrotransposon protein, putative, unclassified
LOC_Os01g43320Os.27192.1.S1_x_at11/111+25080547..25085432amino acid permease, putative, expressed
LOC_Os01g43320Os.27192.1.S1_at11/111+25080547..25085432amino acid permease, putative, expressed
LOC_Os01g43330Os.31670.2.S1_at5/111+25089841..25095081expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006805biological_processxenobiotic metabolism
GO:0009636biological_processresponse to toxin
GO:0009808biological_processlignin metabolism
GO:0042178biological_processxenobiotic catabolism
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0035251molecular_functionUDP-glucosyltransferase activity
GO:0047209molecular_functionconiferyl-alcohol glucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30439.1.S1_at--194--8391Chr01:25067486..25067510 (25 bp)
GGCGAGCCCGACGACAACGGAACAG
LOC_Os01g43280
Os.30439.1.S1_at--453--2571Chr01:25067501..25067525 (25 bp)
AACGGAACAGCAGTGACGGCCCAAT
LOC_Os01g43280
Os.30439.1.S1_at--202--1951Chr01:25067516..25067540 (25 bp)
ACGGCCCAATGATTTGTGTCGGTGT
LOC_Os01g43280
Os.30439.1.S1_at--1037--211Chr01:25067527..25067551 (25 bp)
ATTTGTGTCGGTGTCGGCAGATCGA
LOC_Os01g43280
Os.30439.1.S1_at--499--8252Chr01:25067542..25067566 (25 bp)
GGCAGATCGATCTGGTTCGTTCCCT
LOC_Os01g43280
Os.30439.1.S1_at--679--10731Chr01:25067616..25067640 (25 bp)
TTGCAAACACGTTTGTCTGCTTGGT
LOC_Os01g43280
Os.30439.1.S1_at--114--7471Chr01:25067656..25067680 (25 bp)
GTGTGTCAGTGTCACGCCTAGCTAG
LOC_Os01g43280
Os.30439.1.S1_at--619--10011Chr01:25067674..25067698 (25 bp)
TAGCTAGGCCTAGCTTGTCCAACCG
LOC_Os01g43280
Os.30439.1.S1_at--241--8691Chr01:25067689..25067713 (25 bp)
TGTCCAACCGGAGCTTTGGTGTTTG
LOC_Os01g43280
Os.30439.1.S1_at--993--10751Chr01:25067704..25067728 (25 bp)
TTGGTGTTTGTACGTACCATACGTG
LOC_Os01g43280
Os.30439.1.S1_at--567--1731Chr01:25067719..25067743 (25 bp)
ACCATACGTGTTGTGCTCGGTAATT
LOC_Os01g43280
Target Sequence 
GGCGAGCCCGACGACAACGGAACAGCAGTGACGGCCCAATGATTTGTGTCGGTGTCGGCAGATCGATCTGGTTCGTTCCC
TCGCGCGCGCGCGGCGTTGTGGGCTCGTGCGGTTCCCTTCTTCCCCCCGGTTGCAAACACGTTTGTCTGCTTGGTTGGTG
GTGGTCTGATGTGTGTCAGTGTCACGCCTAGCTAGGCCTAGCTTGTCCAACCGGAGCTTTGGTGTTTGTACGTACCATAC
GTGTTGTGCTCGGTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30439.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis