Browse Element(s) Details


Os.27192.1.S1_at

Description gb:CB647205
DB_XREF= gi:29642198
DB_XREF=OSJNEb10A16.r
CLONE=OSJNEb10A16
TID=Os.27192.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.27192 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0407B12.25 (P0407B12.25), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4332011/11amino acid permease, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43280Os.30439.1.S1_at11/111+25065940..25067834UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g43280OsAffx.23644.1.S1_x_at1/111+25065940..25067834UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g43290NANA1+25068567..25069076hypothetical protein
LOC_Os01g43300NANA1+25071057..25072067retrotransposon protein, putative, unclassified
LOC_Os01g43310Os.28943.1.S1_x_at2/111+25072694..25073026retrotransposon protein, putative, unclassified
LOC_Os01g43320Os.27192.1.S1_x_at11/111+25080547..25085432amino acid permease, putative, expressed
LOC_Os01g43320Os.27192.1.S1_at11/111+25080547..25085432amino acid permease, putative, expressed
LOC_Os01g43330Os.31670.2.S1_at5/111+25089841..25095081expressed protein
LOC_Os01g43340NANA1+25101009..25106212retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27192.1.S1_at--535--8391Chr01:25080765..25080789 (25 bp)
GGCGCATTCGCCTCCATACGGAAGC
LOC_Os01g43320
Os.27192.1.S1_at--950--9411Chr01:25080740..25080764 (25 bp)
TCGTGCTCGACGCTGGACAGTTTAA
LOC_Os01g43320
Os.27192.1.S1_at--159--5811Chr01:25080732..25080756 (25 bp)
GACGCTGGACAGTTTAAGCTCTTCA
LOC_Os01g43320
Os.27192.1.S1_at--245--1211Chr01:25080722..25080746 (25 bp)
AGTTTAAGCTCTTCAGCAACAACGT
LOC_Os01g43320
Os.27192.1.S1_at--31--1411Chr01:25080708..25080732 (25 bp)
AGCAACAACGTCGTGGACTAAATTG
LOC_Os01g43320
Os.27192.1.S1_at--76--2591Chr01:25080702..25080726 (25 bp)
AACGTCGTGGACTAAATTGAATTAT
LOC_Os01g43320
Os.27192.1.S1_at--232--10111Chr01:25080678..25080702 (25 bp)
TATATGTCCGTATATAGGAGGTATA
LOC_Os01g43320
Os.27192.1.S1_at--397--232Chr07:652388..652856 (25 bp)
ATATATCTTCTAGCTAGGTCCTTAA
NONE
Os.27192.1.S1_at--803--9531Chr01:25080621..25080645 (25 bp)
TCTAGCTAGGTCCTTAATTACATTG
LOC_Os01g43320
Os.27192.1.S1_at--1097--3131Chr01:25080606..25080630 (25 bp)
AATTACATTGTATCTTGAGAGGTAT
LOC_Os01g43320
Os.27192.1.S1_at--1147--6012Chr07:1450148..1450174 (24 bp)
GAGAGGTATATAGCTTAATTTGTTA
NONE
Target Sequence 
GGCGCATTCGCCTCCATACGGAAGCTCGTGCTCGACGCTGGACAGTTTAAGCTCTTCAGCAACAACGTCGTGGACTAAAT
TGAATTATATATGTCCGTATATAGGAGGTATATATATATAGGCAGCATATATATATATATATCTTCTAGCTAGGTCCTTA
ATTACATTGTATCTTGAGAGGTATATAGCTTAATTTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27192.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis