Browse Element(s) Details


Os.31670.2.S1_at

Description gb:NM_192847.1
DB_XREF= gi:34912777
GEN=P0407B12.26
TID=Os.31670.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.31670 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0407B12.26 (P0407B12.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0407B12.26 (P0407B12.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g433305/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43280Os.30439.1.S1_at11/111+25065940..25067834UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g43280OsAffx.23644.1.S1_x_at1/111+25065940..25067834UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g43290NANA1+25068567..25069076hypothetical protein
LOC_Os01g43300NANA1+25071057..25072067retrotransposon protein, putative, unclassified
LOC_Os01g43310Os.28943.1.S1_x_at2/111+25072694..25073026retrotransposon protein, putative, unclassified
LOC_Os01g43320Os.27192.1.S1_x_at11/111+25080547..25085432amino acid permease, putative, expressed
LOC_Os01g43320Os.27192.1.S1_at11/111+25080547..25085432amino acid permease, putative, expressed
LOC_Os01g43330Os.31670.2.S1_at5/111+25089841..25095081expressed protein
LOC_Os01g43340NANA1+25101009..25106212retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43350Os.33558.1.S1_at11/111+25111457..25115097Protein kinase domain containing protein, expressed
LOC_Os01g43360Os.30361.1.S1_at11/111+25118981..25121220Myosin tail family protein, expressed
LOC_Os01g43360Os.30361.2.S1_x_at7/111+25118981..25121220Myosin tail family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31670.2.S1_at--816--8451Chr01:25092696..25092720 (25 bp)
TGGCCATCCTATCTCTGAAAGAGCT
LOC_Os01g43330
Os.31670.2.S1_at--321--2431Chr01:25092654..25092678 (25 bp)
AAAAGCTGGTCCTGTTGAGCCTGGC
LOC_Os01g43330
Os.31670.2.S1_at--696--8191Chr01:25091710..25091734 (25 bp)
GGAAGAGGGCTTCCACGCATCTCTG
LOC_Os01g43330
Os.31670.2.S1_at--568--4971Chr01:25091694..25091718 (25 bp)
GCATCTCTGGCAAATCATATTCTGT
LOC_Os01g43330
Os.31670.2.S1_at--34--5411Chr01:25091630..25091654 (25 bp)
GAAGCTACGCAGTCTTGGCAAACTT
LOC_Os01g43330
Os.31670.2.S1_at--1115--3291Chr01:25089419..25089440 (22 bp)
CACAACTCGAGCTACCTTAAGTGGT
NONE
Os.31670.2.S1_at--651--1731Chr01:25089406..25089430 (25 bp)
ACCTTAAGTGGTCTGTGTTGCCGCG
NONE
Os.31670.2.S1_at--571--3231Chr01:25089178..25089315 (25 bp)
CAAGACAGTGCGGTTCGACTCGGAG
NONE
Os.31670.2.S1_at--267--9431Chr01:25089159..25089183 (25 bp)
TCGGAGGTCCGAATCCTCGATTTTG
NONE
Os.31670.2.S1_at--771--10391Chr01:25089139..25089163 (25 bp)
TTTTGCCTCCGCTACAGATGTTACA
NONE
Os.31670.2.S1_at--597--6771Chr01:25089120..25089144 (25 bp)
GTTACACTGCGATCGTACATTGCGA
NONE
Target Sequence 
TGGCCATCCTATCTCTGAAAGAGCTCTTAAGANGGCAGAGAAAAAAGCTGGTCCTGTTGAGCCTGGCTCGTATTGGTANG
ACTACCGTGCTGGGTTTTGGGGTGTCATGGGGCGAGAATGTATCGGCATTATCCCNNCATTCATAAGAGAATTCAATTAC
CCGATGGCCNNTANCTNNGCTAGTGGGGATAGNNNTGTTTTCGTGAATGGCNGAGAACTTCATCAGAGAGATCTNNNTTT
GCTTGTAGGAAGAGGGCTTCCACGCATCTCTGGCAAATCATATTCTGTAGAGATTTCTGGAAATATTACTGATGAAGAAA
CTGGCAAGAAGCTACGCAGTCTTGGCAAACTTGCTCCCACAACTCGAGCTACCTTAAGTGGTCTGTGTTGCCGCGCGGCA
ATTGGCTCGCCGCGCCTCACAAGTCATCCACTAACACTGATTTCTACTACACCAGACAAGACAGTGCGGTTCGACTCGGA
GGTCCGAATCCTCGATTTTGCCTCCGCTACAGATGTTACACTGCGATCGTACATTGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31670.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis