Browse Element(s) Details


Os.33558.1.S1_at

Description gb:AK100122.1
DB_XREF= gi:32985331
TID=Os.33558.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33558 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0501G01.2 (P0501G01.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023007L07, full insert sequence.
FL= gb:AK100122.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4335011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43330Os.31670.2.S1_at5/111+25089841..25095081expressed protein
LOC_Os01g43340NANA1+25101009..25106212retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43350Os.33558.1.S1_at11/111+25111457..25115097Protein kinase domain containing protein, expressed
LOC_Os01g43360Os.30361.1.S1_at11/111+25118981..25121220Myosin tail family protein, expressed
LOC_Os01g43360Os.30361.2.S1_x_at7/111+25118981..25121220Myosin tail family protein, expressed
LOC_Os01g43370Os.9195.1.S1_at11/111+25135378..25140247expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33558.1.S1_at--151--1431Chr01:25112365..25112389 (25 bp)
AGAACGGGTTCGGTGCAATGTCGCC
LOC_Os01g43350
Os.33558.1.S1_at--63--8451Chr01:25111813..25111837 (25 bp)
GGCCACAGCCGAAGGTGAAACCCGT
LOC_Os01g43350
Os.33558.1.S1_at--1006--1311Chr01:25111681..25111705 (25 bp)
AGATGGCCTCAGAATAGCAGCGCAA
LOC_Os01g43350
Os.33558.1.S1_at--451--1651Chr01:25111663..25111687 (25 bp)
AGCGCAAGCTGCTCTCGTGTTCGTG
LOC_Os01g43350
Os.33558.1.S1_at--881--6711Chr01:25111645..25111669 (25 bp)
GTTCGTGTTCGTGATCGAGTTTAAT
LOC_Os01g43350
Os.33558.1.S1_at--679--11Chr01:25111627..25111651 (25 bp)
GTTTAATGGGTAGAACGCGTTCGAT
LOC_Os01g43350
Os.33558.1.S1_at--151--6251Chr01:25111605..25111629 (25 bp)
GATGGAGACGGTTCTTTCCTCTTTC
LOC_Os01g43350
Os.33558.1.S1_at--824--6951Chr01:25111575..25111599 (25 bp)
GTAGCACAGCGTCTTTTTGCCAGGG
LOC_Os01g43350
Os.33558.1.S1_at--843--831Chr01:25111524..25111548 (25 bp)
ATGGAGGTTTTGCACGCTACTCATT
LOC_Os01g43350
Os.33558.1.S1_at--337--2011Chr01:25111506..25111530 (25 bp)
ACTCATTTGCGTGGAACGAAATCCC
LOC_Os01g43350
Os.33558.1.S1_at--1155--3031Chr01:25111487..25111511 (25 bp)
AATCCCACGTGTTAGGAATCCTTGT
LOC_Os01g43350
Target Sequence 
AGAACGGGTTCGGTGCAATGTCGCCGGAGCACACCTTCTCCGCCGTGTCGAACGGCACCCTGCGGTCGCGGCCGGCCAGC
AGCGACGGCAGGTTGCCGACGGCCAAGAAGGCGGACGGCAAGGCGCCCAGGCAAGCAGGGCCACAGCCGAAGGTGAAACC
CGTGAACACGGCGGCGAGGACTCCGCACTCGGCAAGGCGGGCGCTCGGCGTGAAGCCCGACGATCACCTCCAGACCAACG
GCGCTCCCACCGCCCGCCGGAGGACGCCCGAGATGGCCTCAGAATAGCAGCGCAAGCTGCTCTCGTGTTCGTGTTCGTGA
TCGAGTTTAATGGGTAGAACGCGTTCGATGGAGACGGTTCTTTCCTCTTTCCTTCCGTAGCACAGCGTCTTTTTGCCAGG
GGAACCCGAACCTGCAGGGGCATATCAATGGAGGTTTTGCACGCTACTCATTTGCGTGGAACGAAATCCCACGTGTTAGG
AATCCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33558.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis