Browse Element(s) Details


Os.30361.1.S1_at

Description gb:AK108938.1
DB_XREF= gi:32994147
TID=Os.30361.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30361 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0501G01.4 (P0501G01.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-153-B04, full insert sequence.
FL= gb:AK108938.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4336011/11Myosin tail family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43330Os.31670.2.S1_at5/111+25089841..25095081expressed protein
LOC_Os01g43340NANA1+25101009..25106212retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43350Os.33558.1.S1_at11/111+25111457..25115097Protein kinase domain containing protein, expressed
LOC_Os01g43360Os.30361.1.S1_at11/111+25118981..25121220Myosin tail family protein, expressed
LOC_Os01g43360Os.30361.2.S1_x_at7/111+25118981..25121220Myosin tail family protein, expressed
LOC_Os01g43370Os.9195.1.S1_at11/111+25135378..25140247expressed protein
LOC_Os01g43380OsAffx.2225.1.S1_at11/111+25140513..25147244glycosyltransferase family protein 1, putative, expressed
LOC_Os01g43380Os.41226.1.S1_at6/111+25140513..25147244glycosyltransferase family protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30361.1.S1_at--3--7971Chr01:25120987..25121011 (25 bp)
GGATCACGCACAAGGCGAAGGCGAA
LOC_Os01g43360
Os.30361.1.S1_at--974--3131Chr01:25121025..25121049 (25 bp)
AATTATGTATGATTGTTCCCTGTAA
LOC_Os01g43360
Os.30361.1.S1_at--142--10651Chr01:25121040..25121064 (25 bp)
TTCCCTGTAAAATGTATAGTTCTTC
LOC_Os01g43360
Os.30361.1.S1_at--861--10031Chr01:25121056..25121080 (25 bp)
TAGTTCTTCGAGTTTCAAGGGATTC
LOC_Os01g43360
Os.30361.1.S1_at--392--2891Chr01:25121072..25121096 (25 bp)
AAGGGATTCTTATCAGCGCTCTTTA
LOC_Os01g43360
Os.30361.1.S1_at--796--9651Chr01:25121084..25121108 (25 bp)
TCAGCGCTCTTTATGCAAAGTTCAA
LOC_Os01g43360
Os.30361.1.S1_at--7--6291Chr01:25121123..25121147 (25 bp)
GATGTATTGTGCCTTCTATTTTCTC
LOC_Os01g43360
Os.30361.1.S1_at--630--10211Chr01:25121139..25121163 (25 bp)
TATTTTCTCTGATGTTTCTCTGGGA
LOC_Os01g43360
Os.30361.1.S1_at--970--2311Chr01:25121168..25121192 (25 bp)
AAAGGTGACCTGTCGCTGACTATAT
LOC_Os01g43360
Os.30361.1.S1_at--644--7231Chr01:25121179..25121203 (25 bp)
GTCGCTGACTATATACACTATCGCT
LOC_Os01g43360
Os.30361.1.S1_at--719--3311Chr01:25121194..25121218 (25 bp)
CACTATCGCTAGATTTTTCTTTTTA
LOC_Os01g43360
Target Sequence 
GGATCACGCACAAGGCGAAGGCGAAGTCATGATTGAGAAATTATGTATGATTGTTCCCTGTAAAATGTATAGTTCTTCGA
GTTTCAAGGGATTCTTATCAGCGCTCTTTATGCAAAGTTCAAACAGACAATTCTTTGATGTATTGTGCCTTCTATTTTCT
CTGATGTTTCTCTGGGAAAAAAAAGGTGACCTGTCGCTGACTATATACACTATCGCTAGATTTTTCTTTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30361.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis