Browse Element(s) Details


Os.30361.2.S1_x_at

Description gb:NM_192853.1
DB_XREF= gi:34912789
GEN=P0501G01.4
TID=Os.30361.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.30361 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0501G01.4 (P0501G01.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0501G01.4 (P0501G01.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g433607/11Myosin tail family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43330Os.31670.2.S1_at5/111+25089841..25095081expressed protein
LOC_Os01g43340NANA1+25101009..25106212retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43350Os.33558.1.S1_at11/111+25111457..25115097Protein kinase domain containing protein, expressed
LOC_Os01g43360Os.30361.1.S1_at11/111+25118981..25121220Myosin tail family protein, expressed
LOC_Os01g43360Os.30361.2.S1_x_at7/111+25118981..25121220Myosin tail family protein, expressed
LOC_Os01g43370Os.9195.1.S1_at11/111+25135378..25140247expressed protein
LOC_Os01g43380OsAffx.2225.1.S1_at11/111+25140513..25147244glycosyltransferase family protein 1, putative, expressed
LOC_Os01g43380Os.41226.1.S1_at6/111+25140513..25147244glycosyltransferase family protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30361.2.S1_x_at--377--8751Chr01:25119184..25119208 (25 bp)
TGTACCGCGACTGCAAGGGCGACTA
LOC_Os01g43360
Os.30361.2.S1_x_at--263--2951Chr01:25119990..25120014 (25 bp)
AAGGCGCATCCTTGTGATCACAGAT
LOC_Os01g43360
Os.30361.2.S1_x_at--657--6451Chr01:25120005..25120029 (25 bp)
GATCACAGATTTTGCTCTCTACCTT
LOC_Os01g43360
Os.30361.2.S1_x_at--51--9531Chr01:25120020..25120044 (25 bp)
TCTCTACCTTGTTGATCCTGATGCT
LOC_Os01g43360
Os.30361.2.S1_x_at--1009--4791Chr01:25120068..25120092 (25 bp)
GCTCGCGGCTGTCGATAAGCTATGT
LOC_Os01g43360
Os.30361.2.S1_x_at--727--2051Chr01:25120112..25120136 (25 bp)
ACTTCTTTGCAATCATCGTGCCAAC
LOC_Os01g43360
Os.30361.2.S1_x_at--183--2871Chr01:25120229..25120249 (21 bp)
AAGTGGCTTCTTCTAACAGGTTTGA
LOC_Os01g43360
Os.30361.2.S1_x_at--1083--2131Chr01:25122668..25122692 (25 bp)
ACAGATATGTGTCTATTGGTGCTAC
NONE
Os.30361.2.S1_x_at--1098--7311Chr01:25122686..25122710 (25 bp)
GTGCTACAGAATTCCACCAACTGGA
NONE
Os.30361.2.S1_x_at--97--6371Chr01:25122709..25122733 (25 bp)
GATCCTACCAATGAGTTACTACCCT
NONE
Os.30361.2.S1_x_at--615--2991Chr01:25122718..25122742 (25 bp)
AATGAGTTACTACCCTATCACGAGC
NONE
Target Sequence 
TGTACCGCGACTGCAAGGGCGACTACATCGGCGTCCCCAACGACCCGTGCCTCACCAAGATCCTCTCCAAGCAAGGGGAC
AACAAAGTTCTGTTTGCAGATAAGGTATTGAAGTTCACTCAATCAGGAAAGATGAAAAGGCGCATCCTTGTGATCACAGA
TTTTGCTCTCTACCTTGTTGATCCTGATGCTGATATATTGAAGAGGAGGATAGCGCTCGCGGCTGTCGATAAGCTATGTA
TAAGCAAGCTCAGTGATAACTTCTTTGCAATCATCGTGCCAACTGAGTATGATTGTTTAATGGCCAGCACTAGAAAGAAG
GAAATAGTGGATATTATAATTAAGGCTATTAAGAGCAATTCTGAATATCAGCCTCAAGTGGCTTCTTCTAACAGGTTTGA
ATACCATGCTGCTGCTGAAGTGATTAAAGAAGTTGAGTTTGAGGAAGCTGAAGACAGATATGTGTCTATTGGTGCTACAG
AATTCCACCAACTGGATCCTACCAATGAGTTACTACCCTATCACGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30361.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis