Browse Element(s) Details


Os.51456.1.S1_at

Description gb:AK062847.1
DB_XREF= gi:32972865
TID=Os.51456.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51456 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-H11, full insert sequence.
FL= gb:AK062847.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6995011/1150S ribosomal protein L27, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g69930Os.54562.1.S1_at11/111+40765082..40769293DnaJ domain containing protein, expressed
LOC_Os01g69940Os.46432.1.S1_s_at11/111+40769786..40773120F-box family protein, putative, expressed
LOC_Os01g69940Os.5554.1.S1_at11/111+40769786..40773120F-box family protein, putative, expressed
LOC_Os01g69950Os.51456.1.S1_at11/111+40780707..4078352850S ribosomal protein L27, chloroplast precursor, putative, expressed
LOC_Os01g69950Os.4997.1.S1_s_at11/111+40780707..4078352850S ribosomal protein L27, chloroplast precursor, putative, expressed
LOC_Os01g69950Os.46403.1.S1_at8/111+40780707..4078352850S ribosomal protein L27, chloroplast precursor, putative, expressed
LOC_Os01g69960Os.23498.1.S1_at11/111+40786850..40788332expressed protein
LOC_Os01g69970Os.6419.1.S1_at11/111+40789858..40794608Periodic tryptophan protein 1 homolog, putative, expressed
LOC_Os01g69980Os.12146.1.S1_at10/111+40804089..40805984TCP family transcription factor containing protein, expressed
LOC_Os01g69980OsAffx.15397.1.S1_x_at1/111+40804089..40805984TCP family transcription factor containing protein, expressed
LOC_Os01g69984Os.51027.1.S1_at10/111+40805985..40806305NA

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51456.1.S1_at--103--3091Chr01:40783001..40783025 (25 bp)
AATCAATTTCATCGCTGTCATGGGC
LOC_Os01g69950
Os.51456.1.S1_at--880--6451Chr01:40783070..40783094 (25 bp)
GATCAATCGGATTGTCAGCACTTGA
LOC_Os01g69950
Os.51456.1.S1_at--1109--6511Chr01:40783140..40783164 (25 bp)
GATATTCTGCGGTTATCACTCAAGA
LOC_Os01g69950
Os.51456.1.S1_at--872--7611Chr01:40783206..40783230 (25 bp)
GGGAACAACCAACATATGCCATATC
LOC_Os01g69950
Os.51456.1.S1_at--955--1011Chr01:40783287..40783311 (25 bp)
AGGTATTGATCGTCATCTGTTCATC
LOC_Os01g69950
Os.51456.1.S1_at--658--8771Chr01:40783329..40783353 (25 bp)
TGTTACTGTGGTTTTTGGCCCCTCT
LOC_Os01g69950
Os.51456.1.S1_at--724--10051Chr01:40783363..40783387 (25 bp)
TAGTCTAGTCTATCTGCTGTGTTGC
LOC_Os01g69950
Os.51456.1.S1_at--425--4731Chr01:40783378..40783402 (25 bp)
GCTGTGTTGCTTTCGCTGGAACAAA
LOC_Os01g69950
Os.51456.1.S1_at--1037--371Chr01:40783415..40783439 (25 bp)
ATGAGCCTCAGGTGGGATTTTTGTC
LOC_Os01g69950
Os.51456.1.S1_at--172--8711Chr01:40783436..40783460 (25 bp)
TGTCCAATAAAGGTGGCCTGCCATA
LOC_Os01g69950
Os.51456.1.S1_at--872--8411Chr01:40783482..40783506 (25 bp)
GGCCCCTCACTTCTAAGGTGTCAAG
LOC_Os01g69950
Target Sequence 
AATCAATTTCATCGCTGTCATGGGCAGTTGGGCACTGCTAGTATTGTAGAAACAGCACAATATGTTGAAGATCAATCGGA
TTGTCAGCACTTGAAGACGATAGATAACCACTTCATCAAAGAAAAAAAAATAGTACCGTGATATTCTGCGGTTATCACTC
AAGAACAAAAGAAAAGATGGTGGTAATTAGTTCCACTCAAACGAGGGGAACAACCAACATATGCCATATCCTTAGATTAT
TAGAGAAAGTTTAGACTTTTTCTTTCTTTAAGGAAGCTTGTGGATTAGGTATTGATCGTCATCTGTTCATCAAATAATTA
TAAAGGAGTGTTACTGTGGTTTTTGGCCCCTCTTCTCTTTCATAGTCTAGTCTATCTGCTGTGTTGCTTTCGCTGGAACA
AAGCAGAGAGGGGCATGAGCCTCAGGTGGGATTTTTGTCCAATAAAGGTGGCCTGCCATAGGGTAGGTGGGACATGTTCT
TGGCCCCTCACTTCTAAGGTGTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51456.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis