Browse Element(s) Details


Os.51511.1.S1_at

Description gb:AK062985.1
DB_XREF= gi:32973003
TID=Os.51511.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51511 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-109-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-F08, full insert sequence.
FL= gb:AK062985.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4522011/1150S ribosomal protein L20, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45180Os.51124.1.S1_at11/115+26142402..26144398UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g45190OsAffx.15111.1.S1_at8/115+26147547..26148183hypothetical protein
LOC_Os05g45200Os.57078.1.S1_at11/115+26152346..26153859UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g45210Os.47765.1.S1_at10/115+26154233..26162628respiratory burst oxidase homolog, putative, expressed
LOC_Os05g45220Os.51511.1.S1_at11/115+26166316..2616808950S ribosomal protein L20, putative, expressed
LOC_Os05g45230OsAffx.27315.1.S1_at11/115+26173688..26174546hypothetical protein
LOC_Os05g45240NANA5+26178012..26180497flavin monoxygenase-like protein floozy, putative
LOC_Os05g45250NANA5+26184282..26185055transposon protein, putative, unclassified
LOC_Os05g45260OsAffx.27317.1.S1_at11/115+26190033..26191248hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0000311cellular_componentplastid large ribosomal subunit
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51511.1.S1_at--430--9911Chr05:26166992..26167016 (25 bp)
TACTCATACAGGGATCGGCGCAACA
LOC_Os05g45220
Os.51511.1.S1_at--743--7811Chr05:26166952..26166976 (25 bp)
GGTCTCTTTGGATTGAGCGCATCAA
LOC_Os05g45220
Os.51511.1.S1_at--1047--1011Chr05:26166656..26166680 (25 bp)
AGGTACTTTCAGAGCTGTCGATGCA
LOC_Os05g45220
Os.51511.1.S1_at--654--7211Chr05:26166640..26166664 (25 bp)
GTCGATGCATGAGCCATACAGCTTC
LOC_Os05g45220
Os.51511.1.S1_at--939--1551Chr05:26166621..26166645 (25 bp)
AGCTTCAAAGCTCTTGTCGACGTCT
LOC_Os05g45220
Os.51511.1.S1_at--1085--4931Chr05:26166588..26166612 (25 bp)
GCATTCCCTGGAAATAGGCCTGTTA
LOC_Os05g45220
Os.51511.1.S1_at--101--1171Chr05:26166520..26166544 (25 bp)
AGTCTTGTTACAATCACGTCTGAAT
LOC_Os05g45220
Os.51511.1.S1_at--143--2391Chr05:26166494..26166518 (25 bp)
AAACTGGTATTGTTGCCTTCAGCCT
LOC_Os05g45220
Os.51511.1.S1_at--167--9031Chr05:26166470..26166494 (25 bp)
TGCAGCCGTACAGGAAACTCAATGG
LOC_Os05g45220
Os.51511.1.S1_at--503--3511Chr05:26166379..26166403 (25 bp)
CATGTGTTCTTCTTACCTGTTATTG
LOC_Os05g45220
Os.51511.1.S1_at--130--7951Chr05:26166342..26166366 (25 bp)
GGATAATGTGCTCTGTTTACCTTGA
LOC_Os05g45220
Target Sequence 
TACTCATACAGGGATCGGCGCAACAAGAAGAGGGACATGCGGTCTCTTTGGATTGAGCGCATCAATGCTGGTACACGAAT
CCATGGGGTGAACTATGGCAATTTCATGCATGGATTGATGAAGGAGAATATCCAACTCAACAGGAAGGTACTTTCAGAGC
TGTCGATGCATGAGCCATACAGCTTCAAAGCTCTTGTCGACGTCTCTCGCACTGCATTCCCTGGAAATAGGCCTGTTAAG
AAGGAGGGGCTAGCGAGTATTCTTTAAAACAAACCTCCCCAAGTCTTGTTACAATCACGTCTGAATGAAACTGGTATTGT
TGCCTTCAGCCTGCAGCCGTACAGGAAACTCAATGGCAGATATTGCATTTGTAATACTATGTAATTCTGTTTGGAAAGCT
GTGGAAGAGAAACACCTAGTTACATGTGTTCTTCTTACCTGTTATTGTTGGTTTTTTTTGGATAATGTGCTCTGTTTACC
TTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51511.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis