Browse Element(s) Details


OsAffx.15111.1.S1_at

Description tigr:9633.m04226
TID=OsAffx.15111.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g451908/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45120NANA5+26122891..26123175Anthocyanidin 5,3-O-glucosyltransferase, putative
LOC_Os05g45130Os.52789.1.S1_at11/115+26123671..26125446retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g45140OsAffx.15110.1.S1_at11/115+26128341..26129162UDP-glycosyltransfersase, putative
LOC_Os05g45150OsAffx.27314.1.S1_at10/115+26132020..26134877Anthocyanidin 5,3-O-glucosyltransferase, putative
LOC_Os05g45160NANA5+26135286..26139326retrotransposon protein, putative, unclassified
LOC_Os05g45170Os.48555.1.S1_at11/115+26140159..26141126expressed protein
LOC_Os05g45180Os.51124.1.S1_at11/115+26142402..26144398UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g45190OsAffx.15111.1.S1_at8/115+26147547..26148183hypothetical protein
LOC_Os05g45200Os.57078.1.S1_at11/115+26152346..26153859UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g45210Os.47765.1.S1_at10/115+26154233..26162628respiratory burst oxidase homolog, putative, expressed
LOC_Os05g45220Os.51511.1.S1_at11/115+26166316..2616808950S ribosomal protein L20, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15111.1.S1_at--202--3611NONE
CTTAAGCCCCCTGATGATTTAGGTC
NONE
OsAffx.15111.1.S1_at--325--6291NONE
GATGATTTAGGTCGTGCTTTCCCAC
NONE
OsAffx.15111.1.S1_at--146--191NONE
ATTTAGGTCGTGCTTTCCCACAGCT
NONE
OsAffx.15111.1.S1_at--989--3671Chr05:26147790..26147814 (25 bp)
CTTTCCCACAGCTACCTGAGGTCAT
LOC_Os05g45190
OsAffx.15111.1.S1_at--659--6151Chr05:26147807..26147831 (25 bp)
GAGGTCATCCCTCCGATCAACAAGG
LOC_Os05g45190
OsAffx.15111.1.S1_at--621--2951Chr05:26147828..26147852 (25 bp)
AAGGCCGAGTATATAGCCAACGTCG
LOC_Os05g45190
OsAffx.15111.1.S1_at--1102--6071Chr05:26147834..26147858 (25 bp)
GAGTATATAGCCAACGTCGTCATCT
LOC_Os05g45190
OsAffx.15111.1.S1_at--245--10191Chr05:26147839..26147863 (25 bp)
TATAGCCAACGTCGTCATCTCTATG
LOC_Os05g45190
OsAffx.15111.1.S1_at--321--7211Chr05:26147849..26147873 (25 bp)
GTCGTCATCTCTATGCAATCGTACT
LOC_Os05g45190
OsAffx.15111.1.S1_at--197--451Chr05:26147855..26147879 (25 bp)
ATCTCTATGCAATCGTACTCCCATC
LOC_Os05g45190
OsAffx.15111.1.S1_at--1092--8631Chr05:26147908..26147932 (25 bp)
TGGGCCGCATGGCAATGAGGGCGAC
LOC_Os05g45190
Target Sequence 
CTTAAGCCCCCTGATGATTTAGGTCGTGCTTTCCCACAGCTACCTGAGGTCATCCCTCCGATCAACAAGGCCGAGTATAT
AGCCAACGTCGTCATCTCTATGCAATCGTACTCCCATCCTCCCTACACAGGCCCGGCTCTGGGGCATGGGCCGCATGGCA
ATGAGGGCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15111.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis