Browse Element(s) Details


Os.52789.1.S1_at

Description gb:AK069268.1
DB_XREF= gi:32979292
TID=Os.52789.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52789 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023015E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023015E12, full insert sequence.
FL= gb:AK069268.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4513011/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g144101/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45050Os.13565.1.A1_s_at11/115+26096931..26099143reticulon family protein, putative, expressed
LOC_Os05g45050Os.8249.1.S1_at10/115+26096931..26099143reticulon family protein, putative, expressed
LOC_Os05g45050Os.13565.1.A1_at1/115+26096931..26099143reticulon family protein, putative, expressed
LOC_Os05g45060OsAffx.15109.1.S1_at11/115+26103373..26103996Zinc finger, C3HC4 type family protein
LOC_Os05g45070Os.55637.1.S1_at11/115+26106383..26107353Harpin-induced protein 1 containing protein, expressed
LOC_Os05g45080Os.52346.1.S1_at11/115+26109666..26111485UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g45090NANA5+26113120..26114481UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os05g45100NANA5+26115286..26116849UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g45110Os.52713.1.S1_at2/115+26118087..26119505UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os05g45120NANA5+26122891..26123175Anthocyanidin 5,3-O-glucosyltransferase, putative
LOC_Os05g45130Os.52789.1.S1_at11/115+26123671..26125446retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g45140OsAffx.15110.1.S1_at11/115+26128341..26129162UDP-glycosyltransfersase, putative
LOC_Os05g45150OsAffx.27314.1.S1_at10/115+26132020..26134877Anthocyanidin 5,3-O-glucosyltransferase, putative
LOC_Os05g45160NANA5+26135286..26139326retrotransposon protein, putative, unclassified
LOC_Os05g45170Os.48555.1.S1_at11/115+26140159..26141126expressed protein
LOC_Os05g45180Os.51124.1.S1_at11/115+26142402..26144398UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g45190OsAffx.15111.1.S1_at8/115+26147547..26148183hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52789.1.S1_at--736--991Chr05:26124707..26124731 (25 bp)
AGGATCGGCAACATCTTATGGGATT
LOC_Os05g45130
Os.52789.1.S1_at--799--3171Chr05:26124738..26124762 (25 bp)
AATTGGTACGTCGACACGAGTGCGA
LOC_Os05g45130
Os.52789.1.S1_at--952--1871Chr05:26124753..26124777 (25 bp)
ACGAGTGCGACGGACCATGTGACTG
LOC_Os05g45130
Os.52789.1.S1_at--1093--8671Chr05:26124770..26124794 (25 bp)
TGTGACTGGCGAACTGGACAAGCTC
LOC_Os05g45130
Os.52789.1.S1_at--996--2211Chr05:26124787..26124811 (25 bp)
ACAAGCTCACGGTTCGCGATCGCTA
LOC_Os05g45130
Os.52789.1.S1_at--688--5172Chr05:26124818..26124842 (25 bp)
GCAAGATCAAGTTCACACCGCAAGC
LOC_Os05g45130
Os.52789.1.S1_at--936--5411Chr05:26125122..26125146 (25 bp)
GAAGCCTTTGGAGCCATCAAGCCAT
LOC_Os05g45130
Os.52789.1.S1_at--611--9751Chr05:26125217..26125241 (25 bp)
TAATCTTCCTTGTTTAGCTGAGTCA
LOC_Os05g45130
Os.52789.1.S1_at--881--3451Chr05:26125248..26125272 (25 bp)
CAGTCGGTTTGTGATGCATGTCAAC
LOC_Os05g45130
Os.52789.1.S1_at--93--2851Chr05:26125280..26125304 (25 bp)
AAGTCATCAATTGCCCTATTCTAGA
LOC_Os05g45130
Os.52789.1.S1_at--569--6411Chr05:26125303..26125327 (25 bp)
GATCTTCTAGTATGTCGAGTCATCC
LOC_Os05g45130
Target Sequence 
AGGATCGGCAACATCTTATGGGATTGATACAAATTGGTACGTCGACACGAGTGCGACGGACCATGTGACTGGCGAACTGG
ACAAGCTCACGGTTCGCGATCGCTACAAGGGGCAAGATCAAGTTCACACCGCAAGCGGTGCAGGATCTGGCCACGAAGAA
ACTTCTGTTTAGGGGACCATGCCGGGGGCGACTGTACGCTCTTCCATCTTCATCACCTCATGAACGTCCTCGTCCTCTAA
AAGAAGCCTTTGGAGCCATCAAGCCATCCTTTGAGCGATGGCACAGTCGCCTGGGTCATCCAGCCTCTCCAATTGTGGAG
AAAGTCATTAGCAAAAATAATCTTCCTTGTTTAGCTGAGTCAAATAAACAGTCGGTTTGTGATGCATGTCAACAGGGTAA
AAGTCATCAATTGCCCTATTCTAGATCTTCTAGTATGTCGAGTCATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52789.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis