Browse Element(s) Details


Os.8249.1.S1_at

Description gb:AK061354.1
DB_XREF= gi:32971372
TID=Os.8249.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8249 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-308-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-303-G11, full insert sequence.
FL= gb:AK104245.1 gb:AK121753.1 gb:AK061354.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4505010/11reticulon family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44990OsAffx.15107.1.S1_at11/115+26070126..26074441Protein kinase domain containing protein, expressed
LOC_Os05g45000OsAffx.15108.1.S1_at11/115+26076104..26077536Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os05g45010OsAffx.27313.1.S1_at11/115+26081562..26084201Leucine Rich Repeat family protein
LOC_Os05g45020Os.6318.1.S1_at11/115+26087886..26089136Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g45030Os.11098.1.S1_at11/115+26092355..26093838calcium homeostasis regulator CHoR1, putative, expressed
LOC_Os05g45040Os.52901.1.S1_at11/115+26094181..26096566F-box domain containing protein, expressed
LOC_Os05g45050Os.13565.1.A1_s_at11/115+26096931..26099143reticulon family protein, putative, expressed
LOC_Os05g45050Os.8249.1.S1_at10/115+26096931..26099143reticulon family protein, putative, expressed
LOC_Os05g45050Os.13565.1.A1_at1/115+26096931..26099143reticulon family protein, putative, expressed
LOC_Os05g45060OsAffx.15109.1.S1_at11/115+26103373..26103996Zinc finger, C3HC4 type family protein
LOC_Os05g45070Os.55637.1.S1_at11/115+26106383..26107353Harpin-induced protein 1 containing protein, expressed
LOC_Os05g45080Os.52346.1.S1_at11/115+26109666..26111485UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g45090NANA5+26113120..26114481UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os05g45100NANA5+26115286..26116849UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g45110Os.52713.1.S1_at2/115+26118087..26119505UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os05g45120NANA5+26122891..26123175Anthocyanidin 5,3-O-glucosyltransferase, putative
LOC_Os05g45130Os.52789.1.S1_at11/115+26123671..26125446retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005783cellular_componentendoplasmic reticulum
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8249.1.S1_at--87--2251Chr05:26097516..26097641 (25 bp)
AAATTTCTGATTGTTGTCGTGGGTC
LOC_Os05g45050
Os.8249.1.S1_at--414--10591Chr05:26097512..26097637 (25 bp)
TTCTGATTGTTGTCGTGGGTCTCTG
LOC_Os05g45050
Os.8249.1.S1_at--699--131Chr05:26097196..26097220 (25 bp)
ATTAGAAATTGTAGGATGAGCCGTA
LOC_Os05g45050
Os.8249.1.S1_at--832--4271Chr05:26097143..26097167 (25 bp)
CCTGATCACTAATTGTCGGTTTTAA
LOC_Os05g45050
Os.8249.1.S1_at--723--8911Chr05:26097131..26097155 (25 bp)
TTGTCGGTTTTAAAGGATGGCTACG
LOC_Os05g45050
Os.8249.1.S1_at--888--2911Chr05:26097119..26097143 (25 bp)
AAGGATGGCTACGATTCCATGCCTT
LOC_Os05g45050
Os.8249.1.S1_at--701--6231Chr05:26097116..26097140 (25 bp)
GATGGCTACGATTCCATGCCTTTAC
LOC_Os05g45050
Os.8249.1.S1_at--17--2091Chr05:26097076..26097100 (25 bp)
ACATTTTGGTGTGGCTAGTAGTTGC
LOC_Os05g45050
Os.8249.1.S1_at--416--8491Chr05:26097065..26097089 (25 bp)
TGGCTAGTAGTTGCGATGTGCTGAA
LOC_Os05g45050
Os.8249.1.S1_at--1100--10051Chr05:26097061..26097085 (25 bp)
TAGTAGTTGCGATGTGCTGAACTTC
LOC_Os05g45050
Os.8249.1.S1_at--925--771NONE
ATGTGACTTATCTTTATCGGTATTC
NONE
Target Sequence 
AAATTTCTGATTGTTGTCGTGGGTCTCTGGGNTTCTCTCTGTTCTTNGGGAGCTGCTGCAATTTCCTGACCTTGTTCTAC
ATAGTCTTTATGGTACTGTACACCGTGCCTGTTCTGTATGAGAAGTATGAGGACCAAATCGATGCTTTTGGAGAGAAGGC
CATGATCGAACTGAAGAAGTACTATGCTATTTTCGATGAGAAATGCCTCTCTAAGATCCCCAAGGGTCCGTTGAAAAACA
AGAAGCATTAGAAATTGTAGGATGAGCCGTAGAAGGTACTATGCTAATTTATCATCCAGCCTGATCACTAATTGTCGGTT
TTAAAGGATGGCTACGATTCCATGCCTTTACTGATAGTAAATACCTACATTTTGGTGTGGCTAGTAGTTGCGATGTGCTG
AACTTCAATGAATTCGAATTATGCCAGCATGCTCTATCTATATCCTGTTTTCAAACTCATGTTTAACTCAACTTCCGCCC
CTGGAAGCTGTTGGTACTAAGTGCTATCAATATGTGACTTATCTTTATCGGTATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8249.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis