Browse Element(s) Details


Os.11098.1.S1_at

Description gb:AK071678.1
DB_XREF= gi:32981701
TID=Os.11098.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11098 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023107E19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023107E19, full insert sequence.
FL= gb:AK071678.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4503011/11calcium homeostasis regulator CHoR1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44980Os.8468.1.S1_at1/115+26067505..26069239hypothetical protein
LOC_Os05g44990OsAffx.15107.1.S1_at11/115+26070126..26074441Protein kinase domain containing protein, expressed
LOC_Os05g45000OsAffx.15108.1.S1_at11/115+26076104..26077536Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os05g45010OsAffx.27313.1.S1_at11/115+26081562..26084201Leucine Rich Repeat family protein
LOC_Os05g45020Os.6318.1.S1_at11/115+26087886..26089136Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g45030Os.11098.1.S1_at11/115+26092355..26093838calcium homeostasis regulator CHoR1, putative, expressed
LOC_Os05g45040Os.52901.1.S1_at11/115+26094181..26096566F-box domain containing protein, expressed
LOC_Os05g45050Os.13565.1.A1_s_at11/115+26096931..26099143reticulon family protein, putative, expressed
LOC_Os05g45050Os.8249.1.S1_at10/115+26096931..26099143reticulon family protein, putative, expressed
LOC_Os05g45050Os.13565.1.A1_at1/115+26096931..26099143reticulon family protein, putative, expressed
LOC_Os05g45060OsAffx.15109.1.S1_at11/115+26103373..26103996Zinc finger, C3HC4 type family protein
LOC_Os05g45070Os.55637.1.S1_at11/115+26106383..26107353Harpin-induced protein 1 containing protein, expressed
LOC_Os05g45080Os.52346.1.S1_at11/115+26109666..26111485UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g45090NANA5+26113120..26114481UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os05g45100NANA5+26115286..26116849UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g45110Os.52713.1.S1_at2/115+26118087..26119505UDP-glucoronosyl and UDP-glucosyl transferase family protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11098.1.S1_at--974--9251Chr05:26093301..26093325 (25 bp)
TCCGTCGGGAGGCAGGCGGTCGAGA
LOC_Os05g45030
Os.11098.1.S1_at--674--6451Chr05:26093499..26093523 (25 bp)
GATAGACGTCGTTTTTAGGCCAAGA
LOC_Os05g45030
Os.11098.1.S1_at--233--10271Chr05:26093511..26093535 (25 bp)
TTTTAGGCCAAGAAACAGAAATTGC
LOC_Os05g45030
Os.11098.1.S1_at--186--5611Chr05:26093528..26093552 (25 bp)
GAAATTGCATGGCTTACTTGGCCGT
LOC_Os05g45030
Os.11098.1.S1_at--931--3151Chr05:26093530..26093554 (25 bp)
AATTGCATGGCTTACTTGGCCGTGT
LOC_Os05g45030
Os.11098.1.S1_at--933--4891Chr05:26093539..26093563 (25 bp)
GCTTACTTGGCCGTGTTTGTCATAG
LOC_Os05g45030
Os.11098.1.S1_at--713--10451Chr05:26093541..26093565 (25 bp)
TTACTTGGCCGTGTTTGTCATAGAC
LOC_Os05g45030
Os.11098.1.S1_at--968--3591Chr05:26093544..26093568 (25 bp)
CTTGGCCGTGTTTGTCATAGACCGA
LOC_Os05g45030
Os.11098.1.S1_at--980--10731Chr05:26093630..26093654 (25 bp)
TTGCAAGTTTGCGACACAGTTGACG
LOC_Os05g45030
Os.11098.1.S1_at--81--5671Chr05:26093735..26093759 (25 bp)
GACATGCTCAGAAAATGTCTACTGC
LOC_Os05g45030
Os.11098.1.S1_at--788--3411Chr05:26093743..26093767 (25 bp)
CAGAAAATGTCTACTGCTACAGTAC
LOC_Os05g45030
Target Sequence 
TCCGTCGGGAGGCAGGCGGTCGAGAGGATAGTGACCTCCATGGCGAAGCAGGTGGCTGCCGGCGAGAGGAAGGGCCCCGG
CGTCAAGACCGTGTCCAAGGAAGCAGCGCAGCGGCAACTCAAGGACCTGGAATTTCTCAAGCAGAACAAGTTGGATTCGG
CATGAGCATTGTGCAGAACACATTGGGAAATTTTGTCAGATAGACGTCGTTTTTAGGCCAAGAAACAGAAATTGCATGGC
TTACTTGGCCGTGTTTGTCATAGACCGAGTTTTCTCCTAAGATGTGCTAGGAAGGTCAGCTATCGTAGGGAAATAGAAAT
CAGCATAGATTGCAAGTTTGCGACACAGTTGACGCAGGCCAAACAATGGTCTCGGTTCATTAGAATTGCAATGTGAGTGA
GCTCAGAACCTTGTAAGATGAAGTTGTACGTTGTGACATGCTCAGAAAATGTCTACTGCTACAGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11098.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis