Browse Element(s) Details


OsAffx.15107.1.S1_at

Description tigr:9633.m04204
TID=OsAffx.15107.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4499011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44950NANA5+26046652..26050260Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os05g44960OsAffx.15106.3.S1_at11/115+26052834..26056236Protein kinase domain containing protein
LOC_Os05g44970OsAffx.15106.2.S1_at11/115+26060098..26064315Protein kinase domain containing protein
LOC_Os05g44980Os.8468.1.S1_at1/115+26067505..26069239hypothetical protein
LOC_Os05g44990OsAffx.15107.1.S1_at11/115+26070126..26074441Protein kinase domain containing protein, expressed
LOC_Os05g45000OsAffx.15108.1.S1_at11/115+26076104..26077536Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os05g45010OsAffx.27313.1.S1_at11/115+26081562..26084201Leucine Rich Repeat family protein
LOC_Os05g45020Os.6318.1.S1_at11/115+26087886..26089136Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g45030Os.11098.1.S1_at11/115+26092355..26093838calcium homeostasis regulator CHoR1, putative, expressed
LOC_Os05g45040Os.52901.1.S1_at11/115+26094181..26096566F-box domain containing protein, expressed
LOC_Os05g45050Os.13565.1.A1_s_at11/115+26096931..26099143reticulon family protein, putative, expressed
LOC_Os05g45050Os.8249.1.S1_at10/115+26096931..26099143reticulon family protein, putative, expressed
LOC_Os05g45050Os.13565.1.A1_at1/115+26096931..26099143reticulon family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15107.1.S1_at--695--4171Chr05:26073763..26073787 (25 bp)
CCCACGCTTCGTGCATAGGGATGTG
LOC_Os05g44990
OsAffx.15107.1.S1_at--659--5331Chr05:26073787..26073811 (25 bp)
GAAGTCATCGAACATCTTGCTGAAT
LOC_Os05g44990
OsAffx.15107.1.S1_at--595--6531Chr05:26073836..26073860 (25 bp)
GATTTTGGCCTGACAACGGCTTTTA
LOC_Os05g44990
OsAffx.15107.1.S1_at--226--2192Chr05:26073873..26073897 (25 bp)
ACACACATGTATCCACAGTCAGGGT
LOC_Os05g44990
OsAffx.15107.1.S1_at--720--951Chr05:26074102..26074126 (25 bp)
AGGACAGCCGCCCATTATAAAGCTC
LOC_Os05g44990
OsAffx.15107.1.S1_at--271--9831Chr05:26074119..26074143 (25 bp)
TAAAGCTCCCGGAACCTACTACTAT
LOC_Os05g44990
OsAffx.15107.1.S1_at--1139--8731Chr05:26074198..26074222 (25 bp)
TGTAAACATGCCAGACGACCGCTAT
LOC_Os05g44990
OsAffx.15107.1.S1_at--207--5791Chr05:26074211..26074235 (25 bp)
GACGACCGCTATGACATCAACTGTA
LOC_Os05g44990
OsAffx.15107.1.S1_at--71--5591Chr05:26074261..26074285 (25 bp)
GAAATGCACTGCACATGCTCCTGGG
LOC_Os05g44990
OsAffx.15107.1.S1_at--217--691Chr05:26074298..26074322 (25 bp)
ATGACTGACGTGGTGACACAGCTAA
LOC_Os05g44990
OsAffx.15107.1.S1_at--720--8071Chr05:26074386..26074410 (25 bp)
GGAGCAGCATAGACCCAAACTCGAG
LOC_Os05g44990
Target Sequence 
CCCACGCTTCGTGCATAGGGATGTGAAGTCATCGAACATCTTGCTGAATGCAAATCTTGAGGCCAAGGTTGCCGATTTTG
GCCTGACAACGGCTTTTAAATGCGACGGTGACACACATGTATCCACAGTCAGGGTGGTTGGCACATATGGCTACCTTGCA
CCCGAGTATGCCACAGCCCTACAAGTTTCAGAGAAGATTGACGTATACAGCTTCGGTGTGGTGTTGCTAGAGGTGATCAC
AGGACAGCCGCCCATTATAAAGCTCCCGGAACCTACTACTATCATCCAATGGACCCGGCAACGCCTAGCGCGAGGCAACA
TCGAGGGTGTGGTGGATGTAAACATGCCAGACGACCGCTATGACATCAACTGTATCTGGAAGGTAGCAGATGTGGCTCTG
AAATGCACTGCACATGCTCCTGGGCAGCGACCCACAATGACTGACGTGGTGACACAGCTAAAAGAGTGTCTAGAGCTTGA
GGAAACCAGCTTTAAAGGCGACACGAGTAGCAGTTATATGTCAGGGAGCAGCATAGACCCAAACTCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15107.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis