Browse Element(s) Details


OsAffx.27313.1.S1_at

Description tigr:9633.m04206
TID=OsAffx.27313.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4501011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44970OsAffx.15106.2.S1_at11/115+26060098..26064315Protein kinase domain containing protein
LOC_Os05g44980Os.8468.1.S1_at1/115+26067505..26069239hypothetical protein
LOC_Os05g44990OsAffx.15107.1.S1_at11/115+26070126..26074441Protein kinase domain containing protein, expressed
LOC_Os05g45000OsAffx.15108.1.S1_at11/115+26076104..26077536Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os05g45010OsAffx.27313.1.S1_at11/115+26081562..26084201Leucine Rich Repeat family protein
LOC_Os05g45020Os.6318.1.S1_at11/115+26087886..26089136Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g45030Os.11098.1.S1_at11/115+26092355..26093838calcium homeostasis regulator CHoR1, putative, expressed
LOC_Os05g45040Os.52901.1.S1_at11/115+26094181..26096566F-box domain containing protein, expressed
LOC_Os05g45050Os.13565.1.A1_s_at11/115+26096931..26099143reticulon family protein, putative, expressed
LOC_Os05g45050Os.8249.1.S1_at10/115+26096931..26099143reticulon family protein, putative, expressed
LOC_Os05g45050Os.13565.1.A1_at1/115+26096931..26099143reticulon family protein, putative, expressed
LOC_Os05g45060OsAffx.15109.1.S1_at11/115+26103373..26103996Zinc finger, C3HC4 type family protein
LOC_Os05g45070Os.55637.1.S1_at11/115+26106383..26107353Harpin-induced protein 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27313.1.S1_at--653--2811Chr05:26083275..26083299 (25 bp)
AAGATTCTTACCCTGGAGACGGCGG
LOC_Os05g45010
OsAffx.27313.1.S1_at--779--4691Chr05:26083296..26083320 (25 bp)
GCGGCTCCAGATCGCTCTAGAATCT
LOC_Os05g45010
OsAffx.27313.1.S1_at--360--5251Chr05:26083315..26083728 (25 bp)
GAATCTGCTCAAGGCAAGTACTTAA
LOC_Os05g45010
OsAffx.27313.1.S1_at--390--9771Chr05:26083726..26083750 (25 bp)
TAATGACAATGCAACCCACAACCAA
LOC_Os05g45010
OsAffx.27313.1.S1_at--1150--7811Chr05:26083790..26083814 (25 bp)
GGTCACAGGGAAGCCAGCCCTACTA
LOC_Os05g45010
OsAffx.27313.1.S1_at--449--4531Chr05:26083806..26083830 (25 bp)
GCCCTACTACGGGACCTAGATAACA
LOC_Os05g45010
OsAffx.27313.1.S1_at--1084--2971Chr05:26083843..26083867 (25 bp)
AATGGGTACAGCAGCACCTGGCACG
LOC_Os05g45010
OsAffx.27313.1.S1_at--405--5071Chr05:26083856..26083880 (25 bp)
GCACCTGGCACGAGGCAACATCGAG
LOC_Os05g45010
OsAffx.27313.1.S1_at--891--9351Chr05:26083945..26083969 (25 bp)
TCGCACTCAAGTGCACCATGCAGGA
LOC_Os05g45010
OsAffx.27313.1.S1_at--823--5011Chr05:26083964..26083988 (25 bp)
GCAGGAGTCTATACATCGACCCACA
LOC_Os05g45010
OsAffx.27313.1.S1_at--404--1991Chr05:26084091..26084115 (25 bp)
ACATACGGTGTTGACCAATCCACTA
LOC_Os05g45010
Target Sequence 
AAGATTCTTACCCTGGAGACGGCGGCTCCAGATCGCTCTAGAATCTGCTCAAGGCAAGTACTTAATGACAATGCAACCCA
CAACCAAGAGTGATGTTTATAGCTTCGGTGTTGTGTTGTTGGAGTTGGTCACAGGGAAGCCAGCCCTACTACGGGACCTA
GATAACACTAGCATTATCCAATGGGTACAGCAGCACCTGGCACGAGGCAACATCGAGGATGTGGTGGATGCACGCATGCA
TGGAGACCATGACATTAACAGTGTGTGGAAGGTTGTGGACATCGCACTCAAGTGCACCATGCAGGAGTCTATACATCGAC
CCACAATGACTGGCGTGGTGGCAATGTTGCAAGAGTGCATTGAACTTGAAAATAGACATCTGAAAGACTACGCGGCCAAT
AGTGAAAACCACAACTCAAGTTATAATACATACGGTGTTGACCAATCCACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27313.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis