Browse Element(s) Details


OsAffx.15106.2.S1_at

Description tigr:9633.m04202
TID=OsAffx.15106.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4497011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44940OsAffx.15106.1.S1_at11/115+26037156..26043728Protein kinase domain containing protein
LOC_Os05g44950NANA5+26046652..26050260Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os05g44960OsAffx.15106.3.S1_at11/115+26052834..26056236Protein kinase domain containing protein
LOC_Os05g44970OsAffx.15106.2.S1_at11/115+26060098..26064315Protein kinase domain containing protein
LOC_Os05g44980Os.8468.1.S1_at1/115+26067505..26069239hypothetical protein
LOC_Os05g44990OsAffx.15107.1.S1_at11/115+26070126..26074441Protein kinase domain containing protein, expressed
LOC_Os05g45000OsAffx.15108.1.S1_at11/115+26076104..26077536Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os05g45010OsAffx.27313.1.S1_at11/115+26081562..26084201Leucine Rich Repeat family protein
LOC_Os05g45020Os.6318.1.S1_at11/115+26087886..26089136Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15106.2.S1_at--772--10851Chr05:26063631..26063655 (25 bp)
TTGGCTTATCCAAGACGTTCAATCT
LOC_Os05g44970
OsAffx.15106.2.S1_at--196--7751Chr05:26063863..26063887 (25 bp)
GGTGTTGTCCTATTGGAGCTGGTCA
LOC_Os05g44970
OsAffx.15106.2.S1_at--1149--7811Chr05:26063883..26063907 (25 bp)
GGTCACAGGGAAGCCGGCTGTCCTA
LOC_Os05g44970
OsAffx.15106.2.S1_at--880--6891Chr05:26063927..26063951 (25 bp)
GTATCATTCATTGGGCGCAACAGCG
LOC_Os05g44970
OsAffx.15106.2.S1_at--349--8211Chr05:26064023..26064047 (25 bp)
GGAAGGCTACGGACATCGCACTCAA
LOC_Os05g44970
OsAffx.15106.2.S1_at--575--7431Chr05:26064048..26064072 (25 bp)
GTGTACCACACAAGTATCGGCACAA
LOC_Os05g44970
OsAffx.15106.2.S1_at--321--10131Chr05:26064081..26064105 (25 bp)
TATGACCGATGTGGTGGCACAACTG
LOC_Os05g44970
OsAffx.15106.2.S1_at--908--8371Chr05:26064131..26064155 (25 bp)
GGCGTTGTGCCATCAGCAATGCGAA
LOC_Os05g44970
OsAffx.15106.2.S1_at--404--6791Chr05:26064197..26064221 (25 bp)
GTTATGACATGTATGCCACTGACCA
LOC_Os05g44970
OsAffx.15106.2.S1_at--409--4411Chr05:26064211..26064235 (25 bp)
GCCACTGACCACTCTATTGATGTAA
LOC_Os05g44970
OsAffx.15106.2.S1_at--701--1431Chr05:26064239..26064263 (25 bp)
AGAACAGCGCTGCATTTGAGACGGA
LOC_Os05g44970
Target Sequence 
TTGGCTTATCCAAGACGTTCAATCTTGAGAATGGCACACATGTATCTACGAACACGCTTGTTGGCACACCTGGATACGTG
GATCCAGAGTACCAGGCAACAATGCAACCAACGACCAAGAGTGACGTCTATAGCTTTGGTGTTGTCCTATTGGAGCTGGT
CACAGGGAAGCCGGCTGTCCTACGTGATCCAGAGCCCATAAGTATCATTCATTGGGCGCAACAGCGCCTAGCACAGGGTA
ATATTGAGGGAGTGGTGGATGCACGTATGCATGGTGACCATGATGTAAATGGTGTATGGAAGGCTACGGACATCGCACTC
AAGTGTACCACACAAGTATCGGCACAACGGCCCACTATGACCGATGTGGTGGCACAACTGCAAGAGTGCCTCGAGCTCGA
GGAGGGGCGTTGTGCCATCAGCAATGCGAACAACAATTTCTATACCGACAATAACAGCAACTCTAACTCAAGTTATGACA
TGTATGCCACTGACCACTCTATTGATGTAAGTCAGAACAGCGCTGCATTTGAGACGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15106.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis