Browse Element(s) Details


OsAffx.15106.1.S1_at

Description tigr:9633.m04198
TID=OsAffx.15106.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4494011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44900Os.6662.1.S1_at11/115+26011673..26012715expressed protein
LOC_Os05g44910Os.5339.2.S1_x_at11/115+26012784..26015983Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os05g44910Os.5339.1.S1_at10/115+26012784..26015983Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os05g44916Os.8162.1.S1_at11/115+26018012..26023064Mitochondrial processing peptidase alpha subunit, mitochondrial precursor, putative, expressed
LOC_Os05g44922OsAffx.27312.1.S1_at11/115+26023988..26029289phosphofructokinase family protein, putative, expressed
LOC_Os05g44922Os.12014.1.S1_s_at11/115+26023988..26029289phosphofructokinase family protein, putative, expressed
LOC_Os05g44930Os.21832.1.S1_at11/115+26030070..26034640Protein kinase domain containing protein, expressed
LOC_Os05g44940OsAffx.15106.1.S1_at11/115+26037156..26043728Protein kinase domain containing protein
LOC_Os05g44950NANA5+26046652..26050260Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os05g44960OsAffx.15106.3.S1_at11/115+26052834..26056236Protein kinase domain containing protein
LOC_Os05g44970OsAffx.15106.2.S1_at11/115+26060098..26064315Protein kinase domain containing protein
LOC_Os05g44980Os.8468.1.S1_at1/115+26067505..26069239hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15106.1.S1_at--521--10211Chr05:26043115..26043139 (25 bp)
TTTGTTGAACACGAGGCTAGAGGCC
LOC_Os05g44940
OsAffx.15106.1.S1_at--569--10351Chr05:26043168..26043192 (25 bp)
TTTTCAATCCTGAGAACGGCACCCA
LOC_Os05g44940
OsAffx.15106.1.S1_at--244--4651Chr05:26043326..26043350 (25 bp)
GCGTAGGTACCAATCAACAATGCAA
LOC_Os05g44940
OsAffx.15106.1.S1_at--1082--7611Chr05:26043408..26043432 (25 bp)
GGGAAGCCAGCTATCTTGCGTGATC
LOC_Os05g44940
OsAffx.15106.1.S1_at--1002--3551Chr05:26043440..26043464 (25 bp)
CATCAGCATCATCCATTGGGCACAA
LOC_Os05g44940
OsAffx.15106.1.S1_at--900--10831Chr05:26043455..26043479 (25 bp)
TTGGGCACAACAACGCTTAGCACGG
LOC_Os05g44940
OsAffx.15106.1.S1_at--750--8991Chr05:26043503..26043527 (25 bp)
TGCAAGCATGCATGGTGACTACGAT
LOC_Os05g44940
OsAffx.15106.1.S1_at--347--5711Chr05:26043519..26043543 (25 bp)
GACTACGATGTGAATGGCCTATGGA
LOC_Os05g44940
OsAffx.15106.1.S1_at--1101--8191Chr05:26043541..26043565 (25 bp)
GGAAGGTTGCAGACATTGCACTCAA
LOC_Os05g44940
OsAffx.15106.1.S1_at--879--2851Chr05:26043564..26043588 (25 bp)
AAGTGTACGGCGCTTTCGTCAGCAC
LOC_Os05g44940
OsAffx.15106.1.S1_at--887--3691Chr05:26043598..26043622 (25 bp)
CTATGACCGACGTGGTGGCACAGTT
LOC_Os05g44940
Target Sequence 
TTTGTTGAACACGAGGCTAGAGGCCAAGATTGCTGATTTTGGTTTGTCCAAGGTTTTCAATCCTGAGAACGGCACCCATG
TATCTACGAACAAACTTGTTGGCACACCTGGATATGTGGATCCAGAAGAAATACTAATTGTAAGACTTATTGGGACTGAC
CAAATGCGTAGGTACCAATCAACAATGCAACCAACGACTAAGAGTGATGTCTATAGCTTTGGTGTTGTCCTGTTGGAGTT
GGTAACAGGGAAGCCAGCTATCTTGCGTGATCCAGAGCCCATCAGCATCATCCATTGGGCACAACAACGCTTAGCACGGG
GTAACATTGAGGGTGTGGTGAATGCAAGCATGCATGGTGACTACGATGTGAATGGCCTATGGAAGGTTGCAGACATTGCA
CTCAAGTGTACGGCGCTTTCGTCAGCACACCGCCCCACTATGACCGACGTGGTGGCACAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15106.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis