Browse Element(s) Details


OsAffx.15106.3.S1_at

Description tigr:9633.m04201
TID=OsAffx.15106.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4496011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44922OsAffx.27312.1.S1_at11/115+26023988..26029289phosphofructokinase family protein, putative, expressed
LOC_Os05g44922Os.12014.1.S1_s_at11/115+26023988..26029289phosphofructokinase family protein, putative, expressed
LOC_Os05g44930Os.21832.1.S1_at11/115+26030070..26034640Protein kinase domain containing protein, expressed
LOC_Os05g44940OsAffx.15106.1.S1_at11/115+26037156..26043728Protein kinase domain containing protein
LOC_Os05g44950NANA5+26046652..26050260Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os05g44960OsAffx.15106.3.S1_at11/115+26052834..26056236Protein kinase domain containing protein
LOC_Os05g44970OsAffx.15106.2.S1_at11/115+26060098..26064315Protein kinase domain containing protein
LOC_Os05g44980Os.8468.1.S1_at1/115+26067505..26069239hypothetical protein
LOC_Os05g44990OsAffx.15107.1.S1_at11/115+26070126..26074441Protein kinase domain containing protein, expressed
LOC_Os05g45000OsAffx.15108.1.S1_at11/115+26076104..26077536Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15106.3.S1_at--883--8491Chr05:26055553..26055577 (25 bp)
TGGCTTGTCCAAGTCATTCAATCTT
LOC_Os05g44960
OsAffx.15106.3.S1_at--932--2471Chr05:26055602..26055626 (25 bp)
AACACGCTTGTTGGTACTCCCGGAT
LOC_Os05g44960
OsAffx.15106.3.S1_at--330--7751Chr05:26055784..26055808 (25 bp)
GGTGTCGTCCTGCTAGAACTGGTAA
LOC_Os05g44960
OsAffx.15106.3.S1_at--641--2711Chr05:26055846..26055870 (25 bp)
AAGCATTATCCATTGGGCGCAACAA
LOC_Os05g44960
OsAffx.15106.3.S1_at--85--7991Chr05:26055903..26055927 (25 bp)
GGATGCATGTATGTGTGGCGACCAT
LOC_Os05g44960
OsAffx.15106.3.S1_at--451--4951Chr05:26055961..26055985 (25 bp)
GCATTCAAGTGTACCGCGCAGGTAT
LOC_Os05g44960
OsAffx.15106.3.S1_at--201--1951Chr05:26055993..26056017 (25 bp)
ACGGCCCACTATGACTGACGTGGTT
LOC_Os05g44960
OsAffx.15106.3.S1_at--47--7911Chr05:26056014..26056038 (25 bp)
GGTTGCGCAGTTACAAGAGTGCCTT
LOC_Os05g44960
OsAffx.15106.3.S1_at--388--8891Chr05:26056044..26056068 (25 bp)
TGAGGAGGAGCATTGTGCCGTCAAT
LOC_Os05g44960
OsAffx.15106.3.S1_at--1011--3251Chr05:26056080..26056104 (25 bp)
CAACTTCTACACCAGCAATAACAGC
LOC_Os05g44960
OsAffx.15106.3.S1_at--489--2831Chr05:26056116..26056140 (25 bp)
AAGTTATGACACATACGCCGCTGAC
LOC_Os05g44960
Target Sequence 
TGGCTTGTCCAAGTCATTCAATCTTGAGAATGGCACCCATGTATCTACGAACACGCTTGTTGGTACTCCCGGATACGTGG
ATCCAGAGTACCAAGCAACAATGCAACCATCGACCAAGAGTGATGTCTATAGCTTTGGTGTCGTCCTGCTAGAACTGGTA
ACAGGAAAGTCGGCTGTCCTACGTGATCCAGAGCCCATAAGCATTATCCATTGGGCGCAACAACGCCTAGCACAGGGTAA
TATCGAAGAAGTGGTGGATGCATGTATGTGTGGCGACCATGATGTAATTGGTGTATGGAAGGTTGCGGACATCGCATTCA
AGTGTACCGCGCAGGTATCAGCGCGACGGCCCACTATGACTGACGTGGTTGCGCAGTTACAAGAGTGCCTTGAGCTTGAG
GAGGAGCATTGTGCCGTCAATGATGCAAACAACAACTTCTACACCAGCAATAACAGCAAACCTAACTCAAGTTATGACAC
ATACGCCGCTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15106.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis