Browse Element(s) Details


Os.21832.1.S1_at

Description gb:AK073571.1
DB_XREF= gi:32983594
TID=Os.21832.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21832 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033046G16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033046G16, full insert sequence.
FL= gb:AK073571.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4493011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44890NANA5+26003418..26006759retrotransposon protein, putative, unclassified
LOC_Os05g44900Os.6662.1.S1_at11/115+26011673..26012715expressed protein
LOC_Os05g44910Os.5339.2.S1_x_at11/115+26012784..26015983Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os05g44910Os.5339.1.S1_at10/115+26012784..26015983Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os05g44916Os.8162.1.S1_at11/115+26018012..26023064Mitochondrial processing peptidase alpha subunit, mitochondrial precursor, putative, expressed
LOC_Os05g44922OsAffx.27312.1.S1_at11/115+26023988..26029289phosphofructokinase family protein, putative, expressed
LOC_Os05g44922Os.12014.1.S1_s_at11/115+26023988..26029289phosphofructokinase family protein, putative, expressed
LOC_Os05g44930Os.21832.1.S1_at11/115+26030070..26034640Protein kinase domain containing protein, expressed
LOC_Os05g44940OsAffx.15106.1.S1_at11/115+26037156..26043728Protein kinase domain containing protein
LOC_Os05g44950NANA5+26046652..26050260Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os05g44960OsAffx.15106.3.S1_at11/115+26052834..26056236Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21832.1.S1_at--1102--8191Chr05:26034106..26034130 (25 bp)
GGAAGGCCGCAGACATTGCCCTTAA
LOC_Os05g44930
Os.21832.1.S1_at--1007--71Chr05:26034120..26034144 (25 bp)
ATTGCCCTTAAATGCACCGCACAGA
LOC_Os05g44930
Os.21832.1.S1_at--215--5831Chr05:26034167..26034191 (25 bp)
GACCGATGTGGTAGCTCAGCTGCAG
LOC_Os05g44930
Os.21832.1.S1_at--206--3491Chr05:26034189..26034213 (25 bp)
CAGGAGTGCCTAGAGCTCGAGGATA
LOC_Os05g44930
Os.21832.1.S1_at--870--10171Chr05:26034237..26034261 (25 bp)
TATAACAACTTCTATGCCGGCAACA
LOC_Os05g44930
Os.21832.1.S1_at--544--2491Chr05:26034285..26034309 (25 bp)
AACATGTACAACACGGACCAGTCCA
LOC_Os05g44930
Os.21832.1.S1_at--291--6671Chr05:26034378..26034402 (25 bp)
GTTGCACGATAAAGGCCTTTGCCAA
LOC_Os05g44930
Os.21832.1.S1_at--356--10691Chr05:26034396..26034420 (25 bp)
TTGCCAATCTGATCCGAGACTGCTA
LOC_Os05g44930
Os.21832.1.S1_at--849--6351Chr05:26034406..26034430 (25 bp)
GATCCGAGACTGCTAGTCCTAAAAT
LOC_Os05g44930
Os.21832.1.S1_at--1055--6411Chr05:26034511..26034535 (25 bp)
GATCTAGAGCTTTTACCGTGTGGAA
LOC_Os05g44930
Os.21832.1.S1_at--387--351Chr05:26034572..26034596 (25 bp)
ATAACTCTTCCATACTATTCTTCAA
LOC_Os05g44930
Target Sequence 
GGAAGGCCGCAGACATTGCCCTTAAATGCACCGCACAGACATCGACACAACGACCCACTATGACCGATGTGGTAGCTCAG
CTGCAGGAGTGCCTAGAGCTCGAGGATAGGCGATGTGGCATGGAAGATACATATAACAACTTCTATGCCGGCAACAACAA
TGATCCCAACTCAAGTTATAACATGTACAACACGGACCAGTCCACTGATGTGAGTCAAAACAACACGATGGAGCATAATT
TTGAAAGAGTGCCAACCATGGCTACNGGGCCAGTTGCACGATAAAGGCCTTTGCCAATCTGATCCGAGACTGCTAGTCCT
AAAATAGATACATGCAGAACTGAAACAATATTGTTGCTTTAATTTACCAAAGTAAATGCAAGCGCATAAAGTTTCAAACA
ATCAAGATCTAGAGCTTTTACCGTGTGGAATTTGTAATCAATACACTTATCTATTCTTTGATATTTATAACTCTTCCATA
CTATTCTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21832.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis