Browse Element(s) Details


Os.5339.2.S1_x_at

Description gb:AK119495.1
DB_XREF= gi:37989118
TID=Os.5339.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5339 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013090B20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-134-D11, full insert sequence.
FL= gb:AK119495.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4491011/11Dual specificity phosphatase, catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44860NANA5+25986960..25988447retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g44870NANA5+25991581..25993650Zinc knuckle family protein
LOC_Os05g44880NANA5+25996702..26002802retrotransposon protein, putative, unclassified
LOC_Os05g44890NANA5+26003418..26006759retrotransposon protein, putative, unclassified
LOC_Os05g44900Os.6662.1.S1_at11/115+26011673..26012715expressed protein
LOC_Os05g44910Os.5339.2.S1_x_at11/115+26012784..26015983Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os05g44910Os.5339.1.S1_at10/115+26012784..26015983Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os05g44916Os.8162.1.S1_at11/115+26018012..26023064Mitochondrial processing peptidase alpha subunit, mitochondrial precursor, putative, expressed
LOC_Os05g44922OsAffx.27312.1.S1_at11/115+26023988..26029289phosphofructokinase family protein, putative, expressed
LOC_Os05g44922Os.12014.1.S1_s_at11/115+26023988..26029289phosphofructokinase family protein, putative, expressed
LOC_Os05g44930Os.21832.1.S1_at11/115+26030070..26034640Protein kinase domain containing protein, expressed
LOC_Os05g44940OsAffx.15106.1.S1_at11/115+26037156..26043728Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0008138molecular_functionprotein tyrosine/serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5339.2.S1_x_at--70--811Chr05:26013384..26013408 (25 bp)
ATGGGTTCACCACCGAATTCGACAA
LOC_Os05g44910
Os.5339.2.S1_x_at--367--1871Chr05:26013360..26013384 (25 bp)
ACGAGCATTTTGTTTTGCCGTTATG
LOC_Os05g44910
Os.5339.2.S1_x_at--26--1031Chr05:26013332..26013356 (25 bp)
AGGTATGCTAGCCAAGCCTTCAAGC
LOC_Os05g44910
Os.5339.2.S1_x_at--1098--311Chr05:26013257..26013281 (25 bp)
ATACGAAACTTATGCCGATGCTAGC
LOC_Os05g44910
Os.5339.2.S1_x_at--539--8831Chr05:26013189..26013213 (25 bp)
TGATTAGGAGGCTATCCTGCTTCCT
LOC_Os05g44910
Os.5339.2.S1_x_at--1044--10111Chr05:26013177..26013201 (25 bp)
TATCCTGCTTCCTTGGGTCGTTGAA
LOC_Os05g44910
Os.5339.2.S1_x_at--1119--7691Chr05:26013163..26013187 (25 bp)
GGGTCGTTGAAGCTTACCAGCAATT
LOC_Os05g44910
Os.5339.2.S1_x_at--976--7131Chr05:26013117..26013141 (25 bp)
GTCTTGCGGAGGTTCGTGCCTGCTA
LOC_Os05g44910
Os.5339.2.S1_x_at--480--7291Chr05:26013102..26013126 (25 bp)
GTGCCTGCTAGGTAAATGTCCAAAT
LOC_Os05g44910
Os.5339.2.S1_x_at--311--6911Chr05:26013038..26013062 (25 bp)
GTATCGGCATGCATGATGCTCCACA
LOC_Os05g44910
Os.5339.2.S1_x_at--415--5251Chr05:26013005..26013029 (25 bp)
GAATGCCCTCCGGAGAAATTTATAC
LOC_Os05g44910
Target Sequence 
ATGGGTTCACCACCGAATTCGACAACGAGCATTTTGTTTTGCCGTTATGGGAAGGTATGCTAGCCAAGCCTTCAAGCCCC
AGCAGGTCCATCGATGCAGTNGTANTAACAGAGGAAGATCTCGAGGGATACGAAACTTATGCCGATGCTAGCAGTGACAC
TGTATCAGTGGAAGTGGTAATCCGTCANAAGCCCATGATTAGGAGGCTATCCTGCTTCCTTGGGTCGTTGAAGCTTACCA
GCAATTGCGAACCATCTCCTCCAAGNCGTCTTGCGGAGGTTCGTGCCTGCTAGGTAAATGTCCAAATTTTACTGCTTTTT
CCNCGTTGTTAGTCAGCAGAGTGTAAGTATCGGCATGCATGATGCTCCACAGCNTGAGGGAATGCCCTCCGGAGAAATTT
ATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5339.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis