Browse Element(s) Details


OsAffx.15109.1.S1_at

Description tigr:9633.m04212
TID=OsAffx.15109.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C3HC4 type (RING finger), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4506011/11Zinc finger, C3HC4 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45010OsAffx.27313.1.S1_at11/115+26081562..26084201Leucine Rich Repeat family protein
LOC_Os05g45020Os.6318.1.S1_at11/115+26087886..26089136Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g45030Os.11098.1.S1_at11/115+26092355..26093838calcium homeostasis regulator CHoR1, putative, expressed
LOC_Os05g45040Os.52901.1.S1_at11/115+26094181..26096566F-box domain containing protein, expressed
LOC_Os05g45050Os.13565.1.A1_s_at11/115+26096931..26099143reticulon family protein, putative, expressed
LOC_Os05g45050Os.8249.1.S1_at10/115+26096931..26099143reticulon family protein, putative, expressed
LOC_Os05g45050Os.13565.1.A1_at1/115+26096931..26099143reticulon family protein, putative, expressed
LOC_Os05g45060OsAffx.15109.1.S1_at11/115+26103373..26103996Zinc finger, C3HC4 type family protein
LOC_Os05g45070Os.55637.1.S1_at11/115+26106383..26107353Harpin-induced protein 1 containing protein, expressed
LOC_Os05g45080Os.52346.1.S1_at11/115+26109666..26111485UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g45090NANA5+26113120..26114481UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os05g45100NANA5+26115286..26116849UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g45110Os.52713.1.S1_at2/115+26118087..26119505UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os05g45120NANA5+26122891..26123175Anthocyanidin 5,3-O-glucosyltransferase, putative
LOC_Os05g45130Os.52789.1.S1_at11/115+26123671..26125446retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g45140OsAffx.15110.1.S1_at11/115+26128341..26129162UDP-glycosyltransfersase, putative

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15109.1.S1_at--160--4151Chr05:26103596..26103620 (25 bp)
CGCGGGTCATCTTCGTCGCGGACGA
LOC_Os05g45060
OsAffx.15109.1.S1_at--785--7691Chr05:26103599..26103623 (25 bp)
GGGTCATCTTCGTCGCGGACGACTC
LOC_Os05g45060
OsAffx.15109.1.S1_at--662--7751Chr05:26103699..26103723 (25 bp)
GGTGATCGCCTCGTACCCCAAGGTG
LOC_Os05g45060
OsAffx.15109.1.S1_at--661--2851Chr05:26103718..26103742 (25 bp)
AAGGTGCCCTTCTCTAGGGCGGCGA
LOC_Os05g45060
OsAffx.15109.1.S1_at--604--4051Chr05:26103770..26103794 (25 bp)
CGATCTGCCTCTGCGAGTACAAGGA
LOC_Os05g45060
OsAffx.15109.1.S1_at--399--6031Chr05:26103799..26103823 (25 bp)
GAGATGCAGCGCATGATGCCCGAGT
LOC_Os05g45060
OsAffx.15109.1.S1_at--709--9031Chr05:26103803..26103827 (25 bp)
TGCAGCGCATGATGCCCGAGTGCAG
LOC_Os05g45060
OsAffx.15109.1.S1_at--332--2131Chr05:26103830..26103854 (25 bp)
ACAGGTTCCACCTCATGTGCCTGGA
LOC_Os05g45060
OsAffx.15109.1.S1_at--546--1011Chr05:26103832..26103856 (25 bp)
AGGTTCCACCTCATGTGCCTGGACG
LOC_Os05g45060
OsAffx.15109.1.S1_at--212--1751Chr05:26103839..26103863 (25 bp)
ACCTCATGTGCCTGGACGCGTGGCT
LOC_Os05g45060
OsAffx.15109.1.S1_at--852--3751Chr05:26103841..26103865 (25 bp)
CTCATGTGCCTGGACGCGTGGCTGC
LOC_Os05g45060
Target Sequence 
CGCGGGTCATCTTCGTCGCGGACGACTCCGACTCCCCGGGCTCCTCGTCCCGCGGCGGCGCCGGGGGCGGCGCGGCGTCG
TCGCCCGTCGGGCTCGACCCCGCGGTGATCGCCTCGTACCCCAAGGTGCCCTTCTCTAGGGCGGCGACGGGGGCGGACGC
CGAGGCCGCGTGCTCGATCTGCCTCTGCGAGTACAAGGAAGGGGAGATGCAGCGCATGATGCCCGAGTGCAGGCACAGGT
TCCACCTCATGTGCCTGGACGCGTGGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis