Browse Element(s) Details


Os.52346.1.S1_at

Description gb:AK066551.1
DB_XREF= gi:32976569
TID=Os.52346.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52346 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013074J04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074J04, full insert sequence.
FL= gb:AK066551.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4508011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45020Os.6318.1.S1_at11/115+26087886..26089136Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g45030Os.11098.1.S1_at11/115+26092355..26093838calcium homeostasis regulator CHoR1, putative, expressed
LOC_Os05g45040Os.52901.1.S1_at11/115+26094181..26096566F-box domain containing protein, expressed
LOC_Os05g45050Os.13565.1.A1_s_at11/115+26096931..26099143reticulon family protein, putative, expressed
LOC_Os05g45050Os.8249.1.S1_at10/115+26096931..26099143reticulon family protein, putative, expressed
LOC_Os05g45050Os.13565.1.A1_at1/115+26096931..26099143reticulon family protein, putative, expressed
LOC_Os05g45060OsAffx.15109.1.S1_at11/115+26103373..26103996Zinc finger, C3HC4 type family protein
LOC_Os05g45070Os.55637.1.S1_at11/115+26106383..26107353Harpin-induced protein 1 containing protein, expressed
LOC_Os05g45080Os.52346.1.S1_at11/115+26109666..26111485UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g45090NANA5+26113120..26114481UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os05g45100NANA5+26115286..26116849UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g45110Os.52713.1.S1_at2/115+26118087..26119505UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os05g45120NANA5+26122891..26123175Anthocyanidin 5,3-O-glucosyltransferase, putative
LOC_Os05g45130Os.52789.1.S1_at11/115+26123671..26125446retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g45140OsAffx.15110.1.S1_at11/115+26128341..26129162UDP-glycosyltransfersase, putative
LOC_Os05g45150OsAffx.27314.1.S1_at10/115+26132020..26134877Anthocyanidin 5,3-O-glucosyltransferase, putative
LOC_Os05g45160NANA5+26135286..26139326retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006805biological_processxenobiotic metabolism
GO:0009636biological_processresponse to toxin
GO:0042178biological_processxenobiotic catabolism
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0035251molecular_functionUDP-glucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52346.1.S1_at--43--2231Chr05:26110967..26110991 (25 bp)
ACAAGGTGCTCTTGGTGGATGGCAT
LOC_Os05g45080
Os.52346.1.S1_at--388--4031Chr05:26111162..26111186 (25 bp)
CGTTGGCGTTCACCGAATTTCTGAA
LOC_Os05g45080
Os.52346.1.S1_at--887--7931Chr05:26111187..26111211 (25 bp)
GGATTTGAACTTTGGAAACACTACA
LOC_Os05g45080
Os.52346.1.S1_at--1113--5271Chr05:26111282..26111306 (25 bp)
GAATGATTTATATTGCTGCTGGAAT
LOC_Os05g45080
Os.52346.1.S1_at--90--2091Chr05:26111318..26111342 (25 bp)
ACATATCTGCATTATTTACCCGCTG
LOC_Os05g45080
Os.52346.1.S1_at--518--10471Chr05:26111333..26111357 (25 bp)
TTACCCGCTGTGAACTGTGCTATTT
LOC_Os05g45080
Os.52346.1.S1_at--636--1051Chr05:26111382..26111406 (25 bp)
AGGTGTGAGAGTTTCTTCAGGCTGA
LOC_Os05g45080
Os.52346.1.S1_at--162--10571Chr05:26111394..26111418 (25 bp)
TTCTTCAGGCTGATTAGCTGCTTCA
LOC_Os05g45080
Os.52346.1.S1_at--106--1611Chr05:26111409..26111433 (25 bp)
AGCTGCTTCAGCAGTCAGCACTTGT
LOC_Os05g45080
Os.52346.1.S1_at--244--6951Chr05:26111432..26111456 (25 bp)
GTAGATTACACTCTGGAGCCGTGCT
LOC_Os05g45080
Os.52346.1.S1_at--195--8091Chr05:26111446..26111470 (25 bp)
GGAGCCGTGCTTACATGATGGAATA
LOC_Os05g45080
Target Sequence 
ACAAGGTGCTCTTGGTGGATGGCATGCAGCTCGGAGTGGTGATGGACGGCTACGATGAGGAGCTGGTCAAGGCCGAGGAG
GTGGAGAAGAAGGTGAGGTTGGTCATGGAGTTCGAGGAAGGGAAAAAACTCAGGGATAGACTGACAATGGCGAAGGAAAT
GGCCGCGAAGGCGCTGGCAGACGGCGGGTCGTCGTCGTTGGCGTTCACCGAATTTCTGAAGGATTTGAACTTTGGAAACA
CTACAAAGGAAAAAGCGTAGAAGACGAACATTGAGCAGTGCAAACGATCAAGCACAAAAGATGAACATTGAGTTGGAATG
ATTTATATTGCTGCTGGAATGTGACAAAATCACATATCTGCATTATTTACCCGCTGTGAACTGTGCTATTTTTCTGTATT
TCTGATGTGAGCAGAAGGTGTGAGAGTTTCTTCAGGCTGATTAGCTGCTTCAGCAGTCAGCACTTGTAGATTACACTCTG
GAGCCGTGCTTACATGATGGAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52346.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis