Browse Element(s) Details


Os.51525.1.S1_at

Description gb:AK100282.1
DB_XREF= gi:32985491
TID=Os.51525.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51525 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023074M06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023074M06, full insert sequence.
FL= gb:AK063005.1 gb:AK100282.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2090011/11transfactor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20870Os.19480.1.S1_at11/113+11795300..11797085Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g20880OsAffx.12959.1.S1_at11/113+11798795..11802273Pyruvate kinase, cytosolic isozyme, putative
LOC_Os03g20890OsAffx.4986.1.S1_at2/113+11810150..11813676transposon protein, putative, Mutator sub-class
LOC_Os03g20900Os.51525.1.S1_at11/113+11817803..11820050transfactor, putative, expressed
LOC_Os03g20910Os.51648.2.S1_at11/113+11824069..11827834Homeobox domain containing protein, expressed
LOC_Os03g20910Os.51648.1.S1_at11/113+11824069..11827834Homeobox domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51525.1.S1_at--145--6171Chr03:11819494..11819518 (25 bp)
GAGGATTTGTTTCTCGACAAGCTAA
LOC_Os03g20900
Os.51525.1.S1_at--826--5431Chr03:11819607..11819631 (25 bp)
GAACGACACTTATGACGGGCCTAAA
LOC_Os03g20900
Os.51525.1.S1_at--412--4431Chr03:11819693..11819717 (25 bp)
GCCATGTCCTTTAGCACTATCAGTG
LOC_Os03g20900
Os.51525.1.S1_at--453--3431Chr03:11819732..11819756 (25 bp)
CAGATTTTTTCTTCCGATGATCAAT
LOC_Os03g20900
Os.51525.1.S1_at--348--8591Chr03:11819756..11819780 (25 bp)
TGGTATTGCCATGCCTTCGATTGAA
LOC_Os03g20900
Os.51525.1.S1_at--535--2811Chr03:11819780..11819804 (25 bp)
AAGATCAACGCCACTTCACAATTTG
LOC_Os03g20900
Os.51525.1.S1_at--166--3191Chr03:11819798..11819822 (25 bp)
CAATTTGACCATCTCTGCTGTTATA
LOC_Os03g20900
Os.51525.1.S1_at--473--8691Chr03:11819873..11819897 (25 bp)
TGTGCACCACACAAGTTACCAATTT
LOC_Os03g20900
Os.51525.1.S1_at--800--3111Chr03:11819893..11819917 (25 bp)
AATTTGGCCATGTAGATCCCATTCC
LOC_Os03g20900
Os.51525.1.S1_at--843--4191Chr03:11819916..11819940 (25 bp)
CCCGGAGTCGGTAGCATTTGAGAAC
LOC_Os03g20900
Os.51525.1.S1_at--618--3591Chr03:11819952..11819976 (25 bp)
CATTATTCTGCCTTACCGTGATTGT
LOC_Os03g20900
Target Sequence 
GAGGATTTGTTTCTCGACAAGCTAAACAGAAGGCCTTCAAATCATCCAGAAAGGTGTGAGAGGAGAGGTGGCTTTAGTAT
GTCATGCCAGACAGCAAACTTGGATCTGAACATGAACGACACTTATGACGGGCCTAAACACTGCAAGAAATTTGATTTAA
ACGGGTTCAGCTGGGCCTAGGAAATGAGCACTAACAATTGCCATGTCCTTTAGCACTATCAGTGAGAACAAGTGAAAACA
GATTTTTTCTTCCGATGATCAATGGTATTGCCATGCCTTCGATTGAAAGATCAACGCCACTTCACAATTTGACCATCTCT
GCTGTTATAAAATGGTAATTCACTGAAATAAGTGATGGAATTAGCGATAAGATGCTTCTTGTGCACCACACAAGTTACCA
ATTTGGCCATGTAGATCCCATTCCCGGAGTCGGTAGCATTTGAGAACTTGGCACTCTCCATTATTCTGCCTTACCGTGAT
TGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51525.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis