Browse Element(s) Details


Os.51564.1.S1_s_at

Description gb:AK063076.1
DB_XREF= gi:32973094
TID=Os.51564.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51564 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-110-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-H09, full insert sequence.
FL= gb:AK063076.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3507011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35050Os.19099.1.S1_x_at1/114+21112026..21113155retrotransposon, putative, centromere-specific
LOC_Os04g35060Os.18679.1.S1_at11/114+21123052..21130812nicotinate phosphoribosyltransferase, putative, expressed
LOC_Os04g35070Os.51564.1.S1_at11/114+21132258..21133214expressed protein
LOC_Os04g35070Os.51564.1.S1_s_at11/114+21132258..21133214expressed protein
LOC_Os04g35080Os.9839.1.S1_at11/114+21135719..21139578Protein kinase domain containing protein, expressed
LOC_Os04g35080OsAffx.26339.1.S1_x_at10/114+21135719..21139578Protein kinase domain containing protein, expressed
LOC_Os04g35090Os.426.1.S1_at8/114+21142239..2114481040S ribosomal protein S10, putative, expressed
LOC_Os04g35100Os.8221.1.S1_a_at11/114+21144844..21148155MAP3K-like protein kinase, putative, expressed
LOC_Os04g35114Os.36212.1.S1_at10/114+21153387..21157199Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51564.1.S1_s_at--829--6351Chr04:21132860..21132884 (25 bp)
GATGCCTGACGAATCCTGGCTATTC
LOC_Os04g35070
Os.51564.1.S1_s_at--842--3911Chr04:21132875..21132899 (25 bp)
CTGGCTATTCCCTGACGAAGAACGT
LOC_Os04g35070
Os.51564.1.S1_s_at--317--2751Chr04:21132892..21132916 (25 bp)
AAGAACGTGTGTCCCATTTTGGCTC
LOC_Os04g35070
Os.51564.1.S1_s_at--229--5871Chr04:21133032..21133056 (25 bp)
GAGCCTCCAACCCAATGTTGGCTTT
LOC_Os04g35070
Os.51564.1.S1_s_at--1041--3191Chr04:21133044..21133068 (25 bp)
CAATGTTGGCTTTCCTTTTTGTTTG
LOC_Os04g35070
Os.51564.1.S1_s_at--186--8311Chr04:21133051..21133075 (25 bp)
GGCTTTCCTTTTTGTTTGTGATGAA
LOC_Os04g35070
Os.51564.1.S1_s_at--556--10171Chr04:21133083..21133107 (25 bp)
TATATGGATGTACTGTCAACCTTGT
LOC_Os04g35070
Os.51564.1.S1_s_at--566--2631Chr04:21133100..21133124 (25 bp)
AACCTTGTACTAATATTTTCGCTGC
LOC_Os04g35070
Os.51564.1.S1_s_at--719--171Chr04:21133114..21133138 (25 bp)
ATTTTCGCTGCAGCTTTTGTTAAAG
LOC_Os04g35070
Os.51564.1.S1_s_at--897--2411Chr04:21133168..21133192 (25 bp)
AATAAAGCAGCCTCCAAACCCTGTA
LOC_Os04g35070
Os.51564.1.S1_s_at--1062--4171Chr04:21133186..21133210 (25 bp)
CCCTGTACGGGCAACGGACTGATGA
LOC_Os04g35070
Target Sequence 
GATGCCTGACGAATCCTGGCTATTCCCTGACGAAGAACGTGTGTCCCATTTTGGCTCCCCGTTCCTCGCTTGGTCACGGT
AGCGTCTGACATGGAGGGGAATCTTGGCTGAGGCTGGGTGAGGCTGAATACCACCTATGCGCACTGTGAACGCCCTGAGT
CACCGGCAGCAGGAGCCTCCAACCCAATGTTGGCTTTCCTTTTTGTTTGTGATGAAGTAGTAGTATATGGATGTACTGTC
AACCTTGTACTAATATTTTCGCTGCAGCTTTTGTTAAAGCAAAAGCCAAGATTTTCCCATTATCGAAAAATAAAGCAGCC
TCCAAACCCTGTACGGGCAACGGACTGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51564.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis