Browse Element(s) Details


Os.51579.1.S1_at

Description gb:AK063100.1
DB_XREF= gi:32973118
TID=Os.51579.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51579 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-111-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-C06, full insert sequence.
FL= gb:AK063100.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5413011/11Papain family cysteine protease containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g54070NANA3+30949559..30949912hypothetical protein
LOC_Os03g54084OsAffx.25710.1.S1_at11/113+30955132..30964347Phytochrome C, putative, expressed
LOC_Os03g54084Os.24622.1.A1_at11/113+30955132..30964347Phytochrome C, putative, expressed
LOC_Os03g54084Os.3383.1.S1_a_at10/113+30955132..30964347Phytochrome C, putative, expressed
LOC_Os03g54100Os.14641.1.S1_at7/113+30965240..30967857calcium-activated outward-rectifying potassium channel 5,chloroplast precursor, putative, expressed
LOC_Os03g54114OsAffx.25711.1.S1_at10/113+30970384..30973078hypothetical protein
LOC_Os03g54130Os.51579.1.S1_at11/113+30973787..30975621Papain family cysteine protease containing protein, expressed
LOC_Os03g54130Os.11707.1.A1_at11/113+30973787..30975621Papain family cysteine protease containing protein, expressed
LOC_Os03g54150Os.17640.1.S1_at11/113+30977948..30982102expressed protein
LOC_Os03g54160Os.2348.1.S1_a_at11/113+30982122..30991960Floral homeotic protein APETALA1, putative, expressed
LOC_Os03g54160Os.50429.1.S1_at11/113+30982122..30991960Floral homeotic protein APETALA1, putative, expressed
LOC_Os03g54160Os.2348.1.S1_at10/113+30982122..30991960Floral homeotic protein APETALA1, putative, expressed
LOC_Os03g54160Os.2348.2.S1_x_at6/113+30982122..30991960Floral homeotic protein APETALA1, putative, expressed
LOC_Os03g54170Os.49761.1.S1_at11/113+30998772..31005425MADS-box protein CMB1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0007568biological_processaging
GO:0009723biological_processresponse to ethylene stimulus
GO:0010150biological_processleaf senescence
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51579.1.S1_at--50--8091Chr03:30974294..30974318 (25 bp)
GGACCAAGGCTCGTGCGGTACGAAC
LOC_Os03g54130
Os.51579.1.S1_at--356--7291Chr03:30974306..30974330 (25 bp)
GTGCGGTACGAACTCCGGCGAACAC
LOC_Os03g54130
Os.51579.1.S1_at--60--3891Chr03:30974321..30974345 (25 bp)
CGGCGAACACGAACAAACTAATGAT
LOC_Os03g54130
Os.51579.1.S1_at--1148--711Chr03:30974341..30974365 (25 bp)
ATGATTACTTGATCTTGCATGCGTC
LOC_Os03g54130
Os.51579.1.S1_at--164--6431Chr03:30974351..30974375 (25 bp)
GATCTTGCATGCGTCAACTGGTAAT
LOC_Os03g54130
Os.51579.1.S1_at--341--3131Chr03:30974414..30974438 (25 bp)
AATTAATTAACTGGGCGTGCGTGCA
LOC_Os03g54130
Os.51579.1.S1_at--328--8491Chr03:30974439..30974463 (25 bp)
TGGCATGGCATGACACGTACCCGCG
LOC_Os03g54130
Os.51579.1.S1_at--722--3411Chr03:30974501..30974525 (25 bp)
CAGAAGATTCTACCGAGCCAGTCTA
LOC_Os03g54130
Os.51579.1.S1_at--453--4231Chr03:30974513..30974537 (25 bp)
CCGAGCCAGTCTACAGAACAGTCTA
LOC_Os03g54130
Os.51579.1.S1_at--990--5451Chr03:30974528..30974552 (25 bp)
GAACAGTCTACGCATGCACTTTTAG
LOC_Os03g54130
Os.51579.1.S1_at--485--5111Chr03:30974543..30974567 (25 bp)
GCACTTTTAGTCAACTCGAGAGTCA
LOC_Os03g54130
Target Sequence 
GGACCAAGGCTCGTGCGGTACGAACTCCGGCGAACACGAACAAACTAATGATTACTTGATCTTGCATGCGTCAACTGGTA
ATTACGTAATTGAATCGAATAATCACCTGATAAAATTTGCAATTAATTAACTGGGCGTGCGTGCATGGCATGGCATGACA
CGTACCCGCGGTCAAACGGAAAGGTAAAAATGGTCAATCCAAGTAAACAGAAGATTCTACCGAGCCAGTCTACAGAACAG
TCTACGCATGCACTTTTAGTCAACTCGAGAGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51579.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis