Browse Element(s) Details


Os.51620.1.S1_at

Description gb:AK063195.1
DB_XREF= gi:32973213
TID=Os.51620.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51620 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-112-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-C02, full insert sequence.
FL= gb:AK063195.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6029011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60270Os.24893.1.S1_a_at11/111+35189336..35192977WUSCHEL-related homeobox 14, putative, expressed
LOC_Os01g60280Os.34757.1.S1_at11/111+35195255..35206298Protein kinase domain containing protein, expressed
LOC_Os01g60280OsAffx.980.1.S1_at11/111+35195255..35206298Protein kinase domain containing protein, expressed
LOC_Os01g60280Os.52345.1.S1_at10/111+35195255..35206298Protein kinase domain containing protein, expressed
LOC_Os01g60290Os.51620.1.S1_at11/111+35212197..35215541expressed protein
LOC_Os01g60310NANA1+35217538..35218707hypothetical protein
LOC_Os01g60330OsAffx.9457.1.S1_at11/111+35226005..35228563Protein kinase domain containing protein, expressed
LOC_Os01g60340Os.31128.1.S1_x_at1/111+35229152..35233804C2 domain containing protein
LOC_Os01g60350Os.31128.1.S1_x_at11/111+35237472..35240602expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51620.1.S1_at--69--5331Chr01:35212401..35212425 (25 bp)
GTACGGCATCCCACCAAAAGCTTTT
LOC_Os01g60290
Os.51620.1.S1_at--876--2491Chr01:35212384..35212408 (25 bp)
AAGCTTTTGGCCCAAGGGAGTTCAG
LOC_Os01g60290
Os.51620.1.S1_at--83--2231Chr01:35212351..35212375 (25 bp)
ACAAGAGTTGTAGTTCCAGGAGTTT
LOC_Os01g60290
Os.51620.1.S1_at--554--10031Chr01:35212341..35212365 (25 bp)
TAGTTCCAGGAGTTTATCGTACAAA
LOC_Os01g60290
Os.51620.1.S1_at--1041--1991Chr01:35212324..35212348 (25 bp)
CGTACAAAAACATCTTCCTCTTCTA
LOC_Os01g60290
Os.51620.1.S1_at--949--10571Chr01:35212304..35212328 (25 bp)
TTCTACATCTTCATTCCCTAACATG
LOC_Os01g60290
Os.51620.1.S1_at--1051--10631Chr01:35212291..35212315 (25 bp)
TTCCCTAACATGTAGTAACTTCTAG
LOC_Os01g60290
Os.51620.1.S1_at--45--9811Chr01:35212276..35212300 (25 bp)
TAACTTCTAGAACGTGTATCCTCCT
LOC_Os01g60290
Os.51620.1.S1_at--656--10551Chr01:35212272..35212296 (25 bp)
TTCTAGAACGTGTATCCTCCTTTTT
LOC_Os01g60290
Os.51620.1.S1_at--797--5451Chr01:35212267..35212291 (25 bp)
GAACGTGTATCCTCCTTTTTCTCAA
LOC_Os01g60290
Os.51620.1.S1_at--935--7431Chr01:35212263..35212287 (25 bp)
GTGTATCCTCCTTTTTCTCAAGCTC
LOC_Os01g60290
Target Sequence 
GTACGGCATCCCACCAAAAGCTTTTGGCCCAAGGGAGTTCAGGTGGAGGAACAAGAGTTGTAGTTCCAGGAGTTTATCGT
ACAAAAACATCTTCCTCTTCTACATCTTCATTCCCTAACATGTAGTAACTTCTAGAACGTGTATCCTCCTTTTTCTCAAG
CTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51620.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis