Browse Element(s) Details


Os.51629.1.S1_at

Description gb:AK063218.1
DB_XREF= gi:32973236
TID=Os.51629.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51629 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-112-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-E02, full insert sequence.
FL= gb:AK063218.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0985010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09800OsAffx.15994.2.S1_at11/112+5054306..5058036pentatricopeptide, putative
LOC_Os02g09800OsAffx.15994.1.S1_x_at2/112+5054306..5058036pentatricopeptide, putative
LOC_Os02g09810Os.25128.1.S1_at11/112+5058734..5061962amino acid transporter family protein, putative, expressed
LOC_Os02g09820Os.52048.1.S1_at11/112+5063134..5066606Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g09830OsAffx.11963.1.S1_at11/112+5067202..5068039bZIP transcription factor family protein, expressed
LOC_Os02g09840Os.20243.1.S1_at11/112+5071340..5075444calcium-binding EF hand family protein, putative, expressed
LOC_Os02g09840OsAffx.11964.1.S1_at11/112+5071340..5075444calcium-binding EF hand family protein, putative, expressed
LOC_Os02g09850Os.51629.1.S1_at10/112+5079074..5079709expressed protein
LOC_Os02g09860NANA2+5090349..5091312retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g09870NANA2+5094976..5098828retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51629.1.S1_at--1082--3831Chr02:5079649..5079673 (25 bp)
CTGAGATTGATCAAGGCGAGAGGAT
LOC_Os02g09850
Os.51629.1.S1_at--111--9751Chr02:5079614..5079638 (25 bp)
TAATTTCTTGCAAATGAGGCCGGCT
LOC_Os02g09850
Os.51629.1.S1_at--261--9591Chr02:5079609..5079633 (25 bp)
TCTTGCAAATGAGGCCGGCTGGAGC
LOC_Os02g09850
Os.51629.1.S1_at--474--5791Chr02:5079482..5079506 (25 bp)
GACGCCGTACCTGTTCATCGGGTTC
LOC_Os02g09850
Os.51629.1.S1_at--1081--1991Chr02:5079197..5079221 (25 bp)
ACTCGCGCCAGCACCAAAGGTGGTG
LOC_Os02g09850
Os.51629.1.S1_at--804--4511Chr02:5079167..5079191 (25 bp)
GCCGCAGCCGTAATACGTACGCCGG
LOC_Os02g09850
Os.51629.1.S1_at--402--4211Chr02:5079160..5079184 (25 bp)
CCGTAATACGTACGCCGGCGTCAAG
LOC_Os02g09850
Os.51629.1.S1_at--1018--4151Chr02:5079106..5079130 (25 bp)
CGCCGCCATGCGTGGATGTTTCAAG
LOC_Os02g09850
Os.51629.1.S1_at--784--4331Chr02:5079101..5079125 (25 bp)
CCATGCGTGGATGTTTCAAGCTACA
LOC_Os02g09850
Os.51629.1.S1_at--175--6831Chr02:5079089..5079113 (25 bp)
GTTTCAAGCTACATGTGATCAAGGA
LOC_Os02g09850
Os.51629.1.S1_at--684--8831Chr02:5079074..5079098 (25 bp)
TGATCAAGGAGCTAACGATTTTGTC
NONE
Target Sequence 
CTGAGATTGATCAAGGCGAGAGGATTAATTTGGTTTAATTTCTTGCAAATGAGGCCGGCTGGAGCGGCTGACATGGCGAT
GGGCGGGATCGGCGGCGCGGCGGCGTCGACGTCGTCGGTGCCGGCGATGCCGGCGGCGGTGGCGCCGCCGCCGTTCTGGT
CGACGCCGACGCCGTACCTGTTCATCGGGTTCGGGGTGGTGATGGCGCTCATCGCGGTGGCGCTCGCCGTGCTGCTGTGC
ACGCGGCGGAAGGACGGGGGGCGCGGCGTCGGCGGCGAGGAGCGCGGCGACGTCGTCGTCCCGCCGGGGATGATGTCGGT
GCGCGTGCTGGCGCCGCTGGACAGGGAGGCGCCGCCCAGGGTGGTGGTCGTGATGGCCGGCGACGACTCGCCGTCGTTCC
TCGCCAGCGCCACCCCGCTCGCCTTCGCCGCCGCCGCCGCCACCGGCGTGCCACTCGCGCCAGCACCAAAGGTGGTGGCC
CCGCCGCAGCCGTAATACGTACGCCGGCGTCAAGAACGGCGCCGCCGTGTAGTGGCTCGCCGGCGCCGCCATGCGTGGAT
GTTTCAAGCTACATGTGATCAAGGAGCTAACGATTTTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51629.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis