Browse Element(s) Details


Os.51699.1.S1_at

Description gb:AK063457.1
DB_XREF= gi:32973475
TID=Os.51699.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51699 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-115-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-G08, full insert sequence.
FL= gb:AK063457.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3523011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35190Os.9423.1.S1_at11/112+21144841..21155500Chloride channel protein CLC-c, putative, expressed
LOC_Os02g35200Os.11308.1.S1_at11/112+21159188..21159817molybdopterin converting factor, subunit 1 family protein, expressed
LOC_Os02g35210OsAffx.2866.1.S1_at11/112+21160810..21164084NB-ARC domain containing protein
LOC_Os02g35220Os.12954.1.S1_at1/112+21166531..21168014expressed protein
LOC_Os02g35230Os.51699.1.S1_at11/112+21169120..21174303expressed protein
LOC_Os02g35230Os.17676.2.S1_at1/112+21169120..21174303expressed protein
LOC_Os02g35240NANA2+21178266..21178778AP2 domain containing protein
LOC_Os02g35250NANA2+21183316..21183816hypothetical protein
LOC_Os02g35260NANA2+21184800..21185279hypothetical protein
LOC_Os02g35270OsAffx.10637.4.S1_s_at7/112+21187494..21190742transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g35270OsAffx.10637.3.S1_s_at5/112+21187494..21190742transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g35270OsAffx.10637.1.S1_s_at3/112+21187494..21190742transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g35270OsAffx.32056.1.S1_x_at2/112+21187494..21190742transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g35280OsAffx.10496.1.S1_at2/112+21197459..21199776retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51699.1.S1_at--114--2311Chr02:21170368..21170392 (25 bp)
AAATGGAAGCCATCCTGCTGGAGGA
LOC_Os02g35230
Os.51699.1.S1_at--443--1011Chr02:21170028..21170052 (25 bp)
AGGTAACCCCATTTCAGGCTAGTAG
LOC_Os02g35230
Os.51699.1.S1_at--48--931Chr02:21170013..21170037 (25 bp)
AGGCTAGTAGTCTGTCATCCAGCAC
LOC_Os02g35230
Os.51699.1.S1_at--892--9631Chr02:21169979..21170003 (25 bp)
TCAGGCAAGCGGTCCATCGATGAGT
LOC_Os02g35230
Os.51699.1.S1_at--21--10811Chr02:21169415..21169439 (25 bp)
TTGTCGGAACAATCAGCTCGGTGCA
LOC_Os02g35230
Os.51699.1.S1_at--280--6551Chr02:21169373..21169397 (25 bp)
GATTTTCTGGATCAGCTTCGGAGCT
LOC_Os02g35230
Os.51699.1.S1_at--81--1611Chr02:21169352..21169376 (25 bp)
AGCTGCACTTCTTGGATCAGTTTCA
LOC_Os02g35230
Os.51699.1.S1_at--355--6831Chr02:21169325..21169349 (25 bp)
GTTTCAGACTCTTAGACACACGGCC
LOC_Os02g35230
Os.51699.1.S1_at--435--2171Chr02:21169308..21169332 (25 bp)
ACACGGCCGTTCTTCTTGGCTAATG
LOC_Os02g35230
Os.51699.1.S1_at--352--3651Chr02:21169229..21169253 (25 bp)
CTTTTTTACCGGACATAGTTGCTAG
LOC_Os02g35230
Os.51699.1.S1_at--513--171Chr02:21169191..21169215 (25 bp)
ATTTTGATTGGTTCTGTGACTTCTG
LOC_Os02g35230
Target Sequence 
AAATGGAAGCCATCCTGCTGGAGGAAGGAATGTCCAGCCAAAGAATGTTGTAAGCTGCAATGAGCAAAAGAGAAAGGTAA
CCCCATTTCAGGCTAGTAGTCTGTCATCCAGCACAAGGAACAATCAGGCAAGCGGTCCATCGATGAGTAAGAGCAAGCCA
AGACAGGAGAGGCCAAGATGGCGATGACGAAAACGAAGACGATCTTGTCGGAACAATCAGCTCGGTGCAGAAGTGCAGAT
GCGGATGATTTTCTGGATCAGCTTCGGAGCTGCACTTCTTGGATCAGTTTCACTGTTTCAGACTCTTAGACACACGGCCG
TTCTTCTTGGCTAATGGCTGGTGCAGGGCAAACGAAAGTTTGGAGGCAACACGAGCAGGGTTAGGGAATTCTTTTTTACC
GGACATAGTTGCTAGTAGTTGCTACTGTATTTTGATTGGTTCTGTGACTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51699.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis