Browse Element(s) Details


Os.51734.1.S1_x_at

Description gb:AK101923.1
DB_XREF= gi:32987132
TID=Os.51734.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51734 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033071M08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033071M08, full insert sequence.
FL= gb:AK101923.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4798011/11uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os06g300301/11uncharacterized plant-specific domain TIGR01570 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47970Os.11709.1.S1_at11/112+29335385..29352022calpain, putative, expressed
LOC_Os02g47970Os.11709.1.S2_at11/112+29335385..29352022calpain, putative, expressed
LOC_Os02g47980Os.51734.1.S1_x_at11/112+29358233..29359562uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os02g47990OsAffx.25007.2.S1_at1/112+29360332..29361301retrotransposon protein, putative, LINE subclass
LOC_Os02g48000Os.10869.1.S1_at11/112+29367151..29375217TBC domain containing protein, expressed
LOC_Os02g48010Os.11658.1.S2_at11/112+29376525..29382642nuclear matrix constituent protein 1, putative, expressed
LOC_Os02g48010Os.11658.1.S1_at11/112+29376525..29382642nuclear matrix constituent protein 1, putative, expressed
LOC_Os02g48010Os.56102.1.S1_x_at10/112+29376525..29382642nuclear matrix constituent protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51734.1.S1_x_at--616--5371Chr02:29358870..29358890 (21 bp)
GAAGCAACCAATCAACCCAGGCGAG
LOC_Os02g47980
Os.51734.1.S1_x_at--926--7551Chr02:29359053..29359077 (25 bp)
GGGCCTACTGCAACGGCCGAAAGTG
LOC_Os02g47980
Os.51734.1.S1_x_at--782--4231Chr02:29359194..29359218 (25 bp)
CCGAGGAGGGCGACCTGATGTACAT
LOC_Os02g47980
Os.51734.1.S1_x_at--545--1751Chr02:29359206..29359230 (25 bp)
ACCTGATGTACATGCGCGCGAGGTT
LOC_Os02g47980
Os.51734.1.S1_x_at--318--9372Chr06:17284968..17284992 (25 bp)
TCGAGGGACTCGGAGGCGTTCTACA
LOC_Os06g30030
Os.51734.1.S1_x_at--586--3511Chr02:29359270..29359293 (24 bp)
CATGATGAACCCTGACGGCAGCGGA
LOC_Os02g47980
Os.51734.1.S1_x_at--1143--1531Chr02:29359307..29359331 (25 bp)
AGCATCTACCTGCTCAGAGTCTGAC
LOC_Os02g47980
Os.51734.1.S1_x_at--4--6111Chr02:29359323..29359347 (25 bp)
GAGTCTGACCATGGATCATACTATC
LOC_Os02g47980
Os.51734.1.S1_x_at--1087--9932Chr07:4046317..4046336 (20 bp)
TACGTAATCCATCCATCCATGCATG
NONE
Os.51734.1.S1_x_at--76--9231Chr02:29359425..29359449 (25 bp)
TCCATGCATGCATAGTTTGGCTTGT
LOC_Os02g47980
Os.51734.1.S1_x_at--452--8291Chr02:29359443..29359467 (25 bp)
GGCTTGTGTTAATTACTTTCTTGGG
LOC_Os02g47980
Target Sequence 
GAAGCAACCAATCAACCCAGGCGAGAAGCGGCGGGCGCTGCTGGAGGAGCCGACGTGGCGGGCCTACTGCAACGGCCGAA
AGTGCGGCTTCGCGGTGCGCAGGGAGTGCGGCGCCGACGAGTGGAGGGTTCTTGGCGCCGTCGAGCCGGTGTCCGTCGGC
GCCGGCGTTCTCCCCGACGACGCCGCCGCCGCCGCCGCCGCCGAGGAGGGCGACCTGATGTACATGCGCGCGAGGTTCGA
GCGGGTGGTCGGGTCGAGGGACTCGGAGGCGTTCTACATGATGAACCCTGACGGCAGCGGAGGCCCGGAGCTCAGCATCT
ACCTGCTCAGAGTCTGACCATGGATCATACTATCATGGAGCAAAATCGAAAAGAAAAAATGAGAGAAGAAATCATCTTGA
TGTTTGCAATTAATTGTACGTAATCCATCCATCCATGCATGCATAGTTTGGCTTGTGTTAATTACTTTCTTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51734.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis