Browse Element(s) Details


Os.51764.1.S1_at

Description gb:AK063655.1
DB_XREF= gi:32973673
TID=Os.51764.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51764 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-119-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-B08, full insert sequence.
FL= gb:AK063655.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2129011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21240NANA9+12822760..12823020hypothetical protein
LOC_Os09g21250Os.50756.1.S1_at10/119+12824718..12827073expressed protein
LOC_Os09g21260OsAffx.29959.1.S1_at11/119+12830414..12831877Cytochrome P450 family protein, expressed
LOC_Os09g21270OsAffx.17822.1.S1_at11/119+12832198..12833402hypothetical protein
LOC_Os09g21280NANA9+12834965..12837614hypothetical protein
LOC_Os09g21290Os.51764.1.S1_at11/119+12846731..12847958expressed protein
LOC_Os09g21300OsAffx.29960.1.S1_at11/119+12850202..12851458hypothetical protein
LOC_Os09g21310OsAffx.31069.1.S1_x_at2/119+12852497..12855501retrotransposon protein, putative, unclassified
LOC_Os09g21320OsAffx.20387.1.S1_x_at2/119+12856015..12863188retrotransposon protein, putative, unclassified
LOC_Os09g21320OsAffx.10632.1.S1_at1/119+12856015..12863188retrotransposon protein, putative, unclassified
LOC_Os09g21330OsAffx.6358.1.S1_at11/119+12867346..12868395hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51764.1.S1_at--837--2871Chr09:12847139..12847163 (25 bp)
AAGGGCCGCCGCACAAGTTCAGCGT
LOC_Os09g21290
Os.51764.1.S1_at--166--7571Chr09:12846977..12847001 (25 bp)
GGGCGAACTGCCTCTACTGGTTCAA
LOC_Os09g21290
Os.51764.1.S1_at--461--7891Chr09:12846959..12846983 (25 bp)
GGTTCAACTCCTTCAGTCCGGATGA
LOC_Os09g21290
Os.51764.1.S1_at--196--1151Chr09:12846945..12846969 (25 bp)
AGTCCGGATGACTACAACCTGCATG
LOC_Os09g21290
Os.51764.1.S1_at--128--691Chr09:12846938..12846962 (25 bp)
ATGACTACAACCTGCATGTGCTCAG
LOC_Os09g21290
Os.51764.1.S1_at--584--9371Chr09:12846872..12846896 (25 bp)
TCGAGCACGCCTCTTGTGTGCACAA
LOC_Os09g21290
Os.51764.1.S1_at--1134--10831Chr09:12846859..12846883 (25 bp)
TTGTGTGCACAAGCCGTTCTGGCTT
LOC_Os09g21290
Os.51764.1.S1_at--1073--6711Chr09:12846844..12846868 (25 bp)
GTTCTGGCTTGTTCCAACTACTAAT
LOC_Os09g21290
Os.51764.1.S1_at--445--8791Chr09:12846784..12846808 (25 bp)
TGTTCCAGTATCAATTAGTACCAAG
LOC_Os09g21290
Os.51764.1.S1_at--324--10051Chr09:12846769..12846793 (25 bp)
TAGTACCAAGTACTCCGTACTACTT
LOC_Os09g21290
Os.51764.1.S1_at--773--9251Chr09:12846756..12846780 (25 bp)
TCCGTACTACTTTACTTTACCTCAT
LOC_Os09g21290
Target Sequence 
AAGGGCCGCCGCACAAGTTCAGCGTCTACCGGATGGACTTCTCGGCGGCGGGGCCGGCGTGGCGCAGGACGGCGGACATC
GGCGGCGACCGGGCGTTCGTCCTCGGCGGCGGCGGCGGCGGCAACTTCGGCGCGTCGTGCTCGGCGAGCGGGTGCGGGGT
GCGGGCGAACTGCCTCTACTGGTTCAACTCCTTCAGTCCGGATGACTACAACCTGCATGTGCTCAGCGTCGGCGATGGCG
GCGTCGAGACCGTGGCGCCGCCGCCGTTCGAGCACGCCTCTTGTGTGCACAAGCCGTTCTGGCTTGTTCCAACTACTAAT
AATACTGCATGATTAAGATTAGGTTAATTATGTTTTGTTCCAGTATCAATTAGTACCAAGTACTCCGTACTACTTTACTT
TACCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51764.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis