Browse Element(s) Details


OsAffx.29960.1.S1_at

Description tigr:9637.m01833
TID=OsAffx.29960.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2130011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21250Os.50756.1.S1_at10/119+12824718..12827073expressed protein
LOC_Os09g21260OsAffx.29959.1.S1_at11/119+12830414..12831877Cytochrome P450 family protein, expressed
LOC_Os09g21270OsAffx.17822.1.S1_at11/119+12832198..12833402hypothetical protein
LOC_Os09g21280NANA9+12834965..12837614hypothetical protein
LOC_Os09g21290Os.51764.1.S1_at11/119+12846731..12847958expressed protein
LOC_Os09g21300OsAffx.29960.1.S1_at11/119+12850202..12851458hypothetical protein
LOC_Os09g21310OsAffx.31069.1.S1_x_at2/119+12852497..12855501retrotransposon protein, putative, unclassified
LOC_Os09g21320OsAffx.20387.1.S1_x_at2/119+12856015..12863188retrotransposon protein, putative, unclassified
LOC_Os09g21320OsAffx.10632.1.S1_at1/119+12856015..12863188retrotransposon protein, putative, unclassified
LOC_Os09g21330OsAffx.6358.1.S1_at11/119+12867346..12868395hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29960.1.S1_at--464--3811Chr09:12851190..12851408 (25 bp)
CTCCGGTGACGAGGCAAGGATAACC
LOC_Os09g21300
OsAffx.29960.1.S1_at--1089--6191Chr09:12851180..12851398 (25 bp)
GAGGCAAGGATAACCATATATTCGT
LOC_Os09g21300
OsAffx.29960.1.S1_at--279--6471Chr09:12851172..12851196 (25 bp)
GATAACCATATATTCGTTTACCCAC
LOC_Os09g21300
OsAffx.29960.1.S1_at--126--10211Chr09:12851162..12851186 (25 bp)
TATTCGTTTACCCACAATTCCTGTA
LOC_Os09g21300
OsAffx.29960.1.S1_at--400--9391Chr09:12851159..12851183 (25 bp)
TCGTTTACCCACAATTCCTGTATTC
LOC_Os09g21300
OsAffx.29960.1.S1_at--970--2231Chr09:12851149..12851173 (25 bp)
ACAATTCCTGTATTCCCTGCTCAAT
LOC_Os09g21300
OsAffx.29960.1.S1_at--670--8771Chr09:12851141..12851165 (25 bp)
TGTATTCCCTGCTCAATGCTCAATG
LOC_Os09g21300
OsAffx.29960.1.S1_at--541--9311Chr09:12851136..12851160 (25 bp)
TCCCTGCTCAATGCTCAATGCTGAA
LOC_Os09g21300
OsAffx.29960.1.S1_at--502--3171Chr09:12851128..12851152 (25 bp)
CAATGCTCAATGCTGAACGTACCGT
LOC_Os09g21300
OsAffx.29960.1.S1_at--1041--9071Chr09:12851125..12851149 (25 bp)
TGCTCAATGCTGAACGTACCGTTTA
LOC_Os09g21300
OsAffx.29960.1.S1_at--914--8971Chr09:12851115..12851139 (25 bp)
TGAACGTACCGTTTATGGCATCAAC
LOC_Os09g21300
Target Sequence 
CTCCGGTGACGAGGCAAGGATAACCATATATTCGTTTACCCACAATTCCTGTATTCCCTGCTCAATGCTCAATGCTGAAC
GTACCGTTTATGGCATCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29960.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis