Browse Element(s) Details


Os.51827.1.S1_x_at

Description gb:AK063919.1
DB_XREF= gi:32973937
TID=Os.51827.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51827 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-123-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-B07, full insert sequence.
FL= gb:AK063919.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0569010/11AUX1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05660NANA10+2813311..2814946Thaumatin-like protein 1 precursor, putative, expressed
LOC_Os10g05680Os.39943.1.S1_s_at11/1110+2827442..2829627expressed protein
LOC_Os10g05680Os.39943.2.A1_x_at11/1110+2827442..2829627expressed protein
LOC_Os10g05680Os.39943.1.S1_x_at10/1110+2827442..2829627expressed protein
LOC_Os10g05680Os.38340.1.S1_at9/1110+2827442..2829627expressed protein
LOC_Os10g05680Os.39943.2.A1_at8/1110+2827442..2829627expressed protein
LOC_Os10g05690Os.51827.1.S1_x_at10/1110+2833808..2839957AUX1 protein, putative, expressed
LOC_Os10g05690OsAffx.7026.1.S1_x_at4/1110+2833808..2839957AUX1 protein, putative, expressed
LOC_Os10g05700OsAffx.8864.1.S1_at11/1110+2858350..2858901retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g05710Os.46273.1.S1_at11/1110+2860114..2866525retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0009723biological_processresponse to ethylene stimulus
GO:0009733biological_processresponse to auxin stimulus
GO:0009958biological_processpositive gravitropism
GO:0009928cellular_componentcell surface (sensu Magnoliophyta)
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51827.1.S1_x_at--552--8231Chr10:2834144..2834168 (25 bp)
GGCACCGATGCATTTCGTCCTTGGT
LOC_Os10g05690
Os.51827.1.S1_x_at--249--4391Chr10:2834094..2834118 (25 bp)
GCCACGGCCTCTAGCTAATTAATCG
LOC_Os10g05690
Os.51827.1.S1_x_at--566--3431Chr10:2834046..2834070 (25 bp)
CAGAGGTTGGGTTTGCATTATTGCA
LOC_Os10g05690
Os.51827.1.S1_x_at--536--4851Chr10:2834007..2834031 (25 bp)
GCTACTAGCTAGTTGATCATCACTG
LOC_Os10g05690
Os.51827.1.S1_x_at--734--9791Chr10:2833947..2833971 (25 bp)
TAAGCCTCTTTTCCTAATCCTATTG
LOC_Os10g05690
Os.51827.1.S1_x_at--497--51Chr10:2833926..2833950 (25 bp)
ATTGTATGCTTTGCTTCTTTCTTCT
LOC_Os10g05690
Os.51827.1.S1_x_at--463--9571Chr10:2833907..2833931 (25 bp)
TCTTCTTCTTCTGGTTACTGAGAGA
LOC_Os10g05690
Os.51827.1.S1_x_at--964--7851Chr10:2833854..2833878 (25 bp)
GGTATGCATGTCAGAGACACGTTTC
LOC_Os10g05690
Os.51827.1.S1_x_at--778--5631Chr10:2833839..2833863 (25 bp)
GACACGTTTCAAGTCTCTCGTCTTG
LOC_Os10g05690
Os.51827.1.S1_x_at--232--9511Chr10:2833824..2833848 (25 bp)
TCTCGTCTTGTAATGTGTCCTTTTT
LOC_Os10g05690
Os.51827.1.S1_x_at--553--4311Chr10:2833806..2833830 (25 bp)
CCTTTTTGTGTGGAGCTGCTTTTGA
NONE
Target Sequence 
GGCACCGATGCATTTCGTCCTTGGTCACCACCACCATCACCGGCACCACCGCCACGGCCTCTAGCTAATTAATCGAGATC
AATCAAGATCATGATTATCAGAGGTTGGGTTTGCATTATTGCACTAGTTTTTAGTGAGCTACTAGCTAGTTGATCATCAC
TGCAAGATTGTTAATTAGCGCTAGTAATTAGTAAAAGTAAGCCTCTTTTCCTAATCCTATTGTATGCTTTGCTTCTTTCT
TCTTCTTCTGGTTACTGAGAGAGAGTGAGAGTGAGAATGTTTGGTGGTGGGGTATGCATGTCAGAGACACGTTTCAAGTC
TCTCGTCTTGTAATGTGTCCTTTTTGTGTGGAGCTGCTTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51827.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis