Browse Element(s) Details


Os.51851.1.S1_at

Description gb:AK105369.1
DB_XREF= gi:32990578
TID=Os.51851.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51851 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-120-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-120-B08, full insert sequence.
FL= gb:AK064081.1 gb:AK105369.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g373604/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37330NANA7+22360837..22361230hypothetical protein
LOC_Os07g37340NANA7+22365611..22365910hypothetical protein
LOC_Os07g37350Os.5797.1.S1_at11/117+22368586..22370786Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os07g37360Os.51851.1.S1_at4/117+22384653..22385267transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g37370OsAffx.28798.2.S1_s_at11/117+22388990..22390874hypothetical protein
LOC_Os07g37370OsAffx.28798.1.S1_at8/117+22388990..22390874hypothetical protein
LOC_Os07g37380NANA7+22402345..22403543expressed protein
LOC_Os07g37390OsAffx.5560.1.S1_at9/117+22408440..22409259hypothetical protein
LOC_Os07g37400Os.8724.1.S1_at11/117+22409532..22411377F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51851.1.S1_at--750--1591Chr07:22384888..22384912 (25 bp)
AGCTCCCGAGCGTGTTCGTGGAGAC
LOC_Os07g37360
Os.51851.1.S1_at--639--971Chr07:22384783..22384807 (25 bp)
AGGAGATGGGCCTCACGTGGACCTC
LOC_Os07g37360
Os.51851.1.S1_at--912--9291Chr07:22384754..22384778 (25 bp)
TCCGACTCGGACAGCTACAGCGGCA
LOC_Os07g37360
Os.51851.1.S1_at--497--1291Chr07:22384654..22384678 (25 bp)
AGATCGACATCTCCAAGTGCCGGTG
LOC_Os07g37360
Os.51851.1.S1_at--421--5651Chr07:22384649..22384673 (25 bp)
GACATCTCCAAGTGCCGGTGATGAT
NONE
Os.51851.1.S1_at--461--7291Chr07:22384638..22384662 (25 bp)
GTGCCGGTGATGATGGATTGCTTAC
NONE
Os.51851.1.S1_at--103--831Chr07:22384626..22384650 (25 bp)
ATGGATTGCTTACCTATTTTGCCCG
NONE
Os.51851.1.S1_at--807--10691Chr07:22384621..22384645 (25 bp)
TTGCTTACCTATTTTGCCCGGACAA
NONE
Os.51851.1.S1_at--468--10691Chr07:22384608..22384632 (25 bp)
TTGCCCGGACAATCTTATTATCAGG
NONE
Os.51851.1.S1_at--684--3191Chr07:22384599..22384623 (25 bp)
CAATCTTATTATCAGGTCTTCTTCT
NONE
Os.51851.1.S1_at--673--2411Chr07:22384506..22384530 (25 bp)
AAAAAGTGTGCTGATTCGGCGTGTG
NONE
Target Sequence 
AGCTCCCGAGCGTGTTCGTGGAGACGGAGTTCGCGTCGTCGTGGGCGGCGAAAGGGCGCGCGCTGGNGGTGATCCACGAG
GAGTTCGAGGCGGAGTGGGGGCCGGAGGAGATGGGCCTCACGTGGACCTCCGACTCCGACTCGGACAGCTACAGCGGCAG
NGACGACGACGTCGACGACTACCGCGACGGCGACGGGATGATCGAGATCGAGCTGGAGGAGGACAACCTCATCGAGATCG
ACATCTCCAAGTGCCGGTGATGATGGATTGCTTACCTATTTTGCCCGGACAATCTTATTATCAGGTCTTCTTCTCTTTTT
TTTTTCCTTGGGGATTTCTTGGTCCTTTGGGTTTGGTAATTTGATTTCTGACAAACAAATTAAAAAAAGTGTGCTGATTC
GGCGTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51851.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis